Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G227000.1 | Wheat | extracellular | 95.54 | 95.54 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 92.86 | 93.69 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 91.96 | 91.15 |
| Os09t0414900-01 | Rice | extracellular | 75.89 | 75.89 |
| OQU89489 | Sorghum | extracellular | 73.21 | 71.3 |
| PGSC0003DMT400083077 | Potato | extracellular | 51.79 | 56.31 |
| Solyc06g069790.2.1 | Tomato | extracellular | 50.89 | 54.81 |
| Solyc03g116060.2.1 | Tomato | extracellular | 50.0 | 53.85 |
| KRG93532 | Soybean | extracellular | 52.68 | 53.64 |
| KRH40097 | Soybean | extracellular | 50.89 | 53.27 |
| VIT_17s0000g06210.t01 | Wine grape | extracellular | 49.11 | 52.88 |
| PGSC0003DMT400050285 | Potato | extracellular | 49.11 | 52.88 |
| AT1G74670.1 | Thale cress | extracellular | 47.32 | 52.48 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 49.11 | 51.89 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 45.54 | 51.52 |
| KRH01173 | Soybean | extracellular | 49.11 | 51.4 |
| CDY71845 | Canola | extracellular | 45.54 | 50.49 |
| Bra008162.1-P | Field mustard | extracellular | 45.54 | 50.49 |
| CDX70601 | Canola | extracellular | 46.43 | 49.06 |
| CDX91001 | Canola | extracellular | 45.54 | 48.11 |
| CDX85557 | Canola | extracellular | 45.54 | 48.11 |
| Bra023513.1-P | Field mustard | extracellular | 45.54 | 48.11 |
| AT5G15230.1 | Thale cress | extracellular | 44.64 | 47.17 |
| KRH63343 | Soybean | extracellular | 44.64 | 47.17 |
| KRH54552 | Soybean | extracellular | 44.64 | 47.17 |
| Zm00001d023290_P001 | Maize | extracellular | 47.32 | 41.09 |
| TraesCS1B01G404100.1 | Wheat | extracellular | 35.71 | 38.84 |
| TraesCS5B01G403600.1 | Wheat | endoplasmic reticulum, extracellular | 33.93 | 38.78 |
| TraesCS5B01G403500.1 | Wheat | extracellular | 31.25 | 37.23 |
| GSMUA_Achr8P22060_001 | Banana | extracellular | 39.29 | 36.36 |
| CDX78620 | Canola | cytosol | 40.18 | 32.14 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G225600.1 | EnsemblPlantsGene:TraesCS5B01G225600 | InterPro:GASA | PANTHER:PTHR23201 | PANTHER:PTHR23201:SF23 | PFAM:PF02704 |
| SEG:seg | SignalP:SignalP-noTM | MapMan:11.10.2.1.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:401073468..401074124
Molecular Weight (calculated)
12489.2 Da
IEP (calculated)
8.154
GRAVY (calculated)
-0.182
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MALAGRLLVL LAVALLAVSI IAEHKVFASG TEEHEDNVYR VSKGGQGTLK IYQCKPACEY RCSDTKYRKP CLFFCNKCCN TCLCVPSGFY GHKDECACYN
101: DWKTKEGHPK CP
101: DWKTKEGHPK CP
001: MMKLIVVFVI SSLLFATQFS NGDELESQAQ APAIHKNGGE GSLKPEECPK ACEYRCSATS HRKPCLFFCN KCCNKCLCVP SGTYGHKEEC PCYNNWTTKE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA12Gibberellin-regulated protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q6GKX7]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.