Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 8
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G15230.1 | KRH42483 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | KRH58580 | AT2G01950.1 | 19000166 |
| AT5G15230.1 | KRH06004 | AT5G42220.1 | 21798944 |
| AT5G15230.1 | KRH17506 | AT5G42220.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH40097 | Soybean | extracellular | 96.26 | 96.26 |
| VIT_14s0108g00740.t01 | Wine grape | extracellular | 78.5 | 79.25 |
| KRG93532 | Soybean | extracellular | 81.31 | 79.09 |
| KRH63343 | Soybean | extracellular | 66.36 | 66.98 |
| KRH54552 | Soybean | extracellular | 65.42 | 66.04 |
| GSMUA_Achr6P02710_001 | Banana | extracellular | 62.62 | 61.47 |
| AT5G15230.1 | Thale cress | extracellular | 60.75 | 61.32 |
| CDX70601 | Canola | extracellular | 60.75 | 61.32 |
| Bra023513.1-P | Field mustard | extracellular | 59.81 | 60.38 |
| CDX85557 | Canola | extracellular | 59.81 | 60.38 |
| CDX91001 | Canola | extracellular | 59.81 | 60.38 |
| GSMUA_Achr7P18070_001 | Banana | extracellular | 60.75 | 59.63 |
| TraesCS7D01G210500.1 | Wheat | extracellular | 52.34 | 59.57 |
| AT1G74670.1 | Thale cress | extracellular | 56.07 | 59.41 |
| Bra008162.1-P | Field mustard | extracellular | 54.21 | 57.43 |
| CDY71845 | Canola | extracellular | 53.27 | 56.44 |
| KRH17367 | Soybean | endoplasmic reticulum, extracellular | 50.47 | 55.67 |
| OQU89489 | Sorghum | extracellular | 59.81 | 55.65 |
| TraesCS7B01G115300.1 | Wheat | extracellular | 51.4 | 55.56 |
| Os09t0414900-01 | Rice | extracellular | 57.94 | 55.36 |
| KRH73005 | Soybean | endoplasmic reticulum, extracellular | 49.53 | 54.64 |
| TraesCS7A01G208100.1 | Wheat | extracellular | 51.4 | 54.46 |
| HORVU5Hr1G065670.1 | Barley | extracellular | 54.21 | 51.33 |
| Os06t0266800-02 | Rice | extracellular | 52.34 | 50.91 |
| TraesCS5A01G227000.1 | Wheat | extracellular | 52.34 | 50.0 |
| TraesCS5D01G234400.1 | Wheat | extracellular | 51.4 | 49.55 |
| TraesCS5B01G225600.1 | Wheat | extracellular | 51.4 | 49.11 |
| KRH18120 | Soybean | extracellular | 40.19 | 46.24 |
| KRH18123 | Soybean | extracellular | 40.19 | 46.24 |
| KRG97330 | Soybean | extracellular | 39.25 | 45.65 |
| KRH05612 | Soybean | extracellular | 37.38 | 45.45 |
| EER89583 | Sorghum | extracellular | 47.66 | 44.74 |
| KRH15429 | Soybean | extracellular | 36.45 | 44.32 |
| CDX78620 | Canola | cytosol | 57.01 | 43.57 |
| Zm00001d023290_P001 | Maize | extracellular | 51.4 | 42.64 |
| EES16564 | Sorghum | extracellular | 50.47 | 42.52 |
| KRH52061 | Soybean | extracellular | 34.58 | 42.05 |
| KRG95149 | Soybean | extracellular | 50.47 | 39.42 |
| KRH66831 | Soybean | extracellular | 49.53 | 38.41 |
| KRH35705 | Soybean | extracellular | 30.84 | 36.67 |
| OQU77894 | Sorghum | extracellular | 45.79 | 35.77 |
| KRG91068 | Soybean | extracellular | 29.91 | 35.56 |
| Zm00001d038056_P001 | Maize | extracellular | 45.79 | 33.79 |
| Os05t0376800-01 | Rice | extracellular | 45.79 | 32.24 |
| HORVU7Hr1G042390.2 | Barley | cytosol | 49.53 | 21.99 |
Protein Annotations
| EMBL:ACUP02011503 | EMBL:BT095024 | EnsemblPlants:KRH01173 | EnsemblPlantsGene:GLYMA_18G259400 | EntrezGene:100787539 | InterPro:GASA |
| PANTHER:PTHR23201 | PANTHER:PTHR23201:SF21 | PFAM:PF02704 | ProteinID:KRH01173 | ProteinID:KRH01173.1 | SEG:seg |
| SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000004A1BA | UniProt:C6TBV2 | MapMan:11.10.2.1.1 | : |
Description
hypothetical protein
Coordinates
chr18:+:54518723..54520581
Molecular Weight (calculated)
11997.8 Da
IEP (calculated)
9.223
GRAVY (calculated)
-0.311
Length
107 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKFFAAMIL ALIAISMLQT VVMAANEQGG HLYDNKSKYG SGSVKRYQCP SQCSRRCSQT QYHKPCMFFC QKCCRKCLCV PPGYYGNKAV CPCYNNWKTK
101: EGGPKCP
101: EGGPKCP
001: MAKSYGAIFL LTLIVLFMLQ TMVMASSGSN VKWSQKRYGP GSLKRTQCPS ECDRRCKKTQ YHKACITFCN KCCRKCLCVP PGYYGNKQVC SCYNNWKTQE
101: GGPKCP
101: GGPKCP
Arabidopsis Description
GASA4Gibberellin-regulated protein 4 [Source:UniProtKB/Swiss-Prot;Acc:P46690]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.