Factsheet for VIT_00s0189g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0189g00060.t01	Wine grape	cytosol, extracellular, nucleus	62.07	84.38
CDY14668	Canola	cytosol	55.17	64.86
GSMUA_Achr11P...	Banana	cytosol	51.72	61.64
Os10t0115550-00	Rice	endoplasmic reticulum, extracellular	48.28	59.15
KRG97330	Soybean	extracellular	58.62	55.43
KRH18123	Soybean	extracellular	58.62	54.84
KRH18120	Soybean	extracellular	58.62	54.84
KXG38749	Sorghum	extracellular	64.37	53.33
Zm00001d030236_P001	Maize	extracellular	63.22	52.38
Solyc06g007920.1.1	Tomato	cytosol	47.13	48.81
TraesCS1A01G381700.1	Wheat	cytosol	42.53	47.44
AT2G30810.1	Thale cress	extracellular	57.47	47.17
CDY27104	Canola	extracellular	56.32	46.67
CDY46336	Canola	extracellular	55.17	46.15
CDY18069	Canola	extracellular	55.17	46.15
VIT_17s0000g06210.t01	Wine grape	extracellular	54.02	45.19
TraesCS1A01G381600.1	Wheat	extracellular	51.72	43.69
TraesCS1D01G389400.1	Wheat	extracellular	51.72	43.69
VIT_18s0001g09460.t01	Wine grape	extracellular	43.68	43.18
Solyc06g007910.2.1	Tomato	extracellular, nucleus	45.98	42.55
PGSC0003DMT400003089	Potato	extracellular	45.98	42.55
VIT_14s0108g00740.t01	Wine grape	extracellular	51.72	42.45
VIT_03s0091g00390.t01	Wine grape	extracellular	42.53	42.05
TraesCS1B01G404100.1	Wheat	extracellular	49.43	41.75
HORVU1Hr1G084230.1	Barley	extracellular	54.02	41.59
VIT_08s0007g05860.t01	Wine grape	extracellular	54.02	41.23
PGSC0003DMT400003086	Potato	extracellular	43.68	40.43
Solyc06g007890.2.1	Tomato	extracellular	42.53	39.36
VIT_07s0129g00580.t01	Wine grape	extracellular	41.38	28.35

Protein Annotations

ArrayExpress:VIT_00s0189g00070	EMBL:FN595521	EnsemblPlants:VIT_00s0189g00070.t01	EnsemblPlantsGene:VIT_00s0189g00070	EntrezGene:100854558	EntrezGene:LOC100854558
InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF1	PFAM:PF02704	ProteinID:CCB50014	ProteinID:CCB50014.1
RefSeq:XP_003635031	RefSeq:XP_003635031.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00021095EC
UniProt:F6HCR9	wikigene:100854558	wikigene:LOC100854558	MapMan:11.10.2.1.1	:	:

Description

No Description!

Coordinates

chrUn:-:9791751..9792494

Molecular Weight (calculated)

9724.0 Da

IEP (calculated)

7.774

GRAVY (calculated)

0.087

Length

87 amino acids

Sequence
(BLAST)

1: MAQSSNLQSI FLLLLVAFML LVDVSIVKCP KACNYRCSDT QYLNACLEFC NLCCQKCLCV PSGTYGHKEE CPCYNNWKTK EGGPKCP

Best Arabidopsis Sequence Match ( AT2G30810.1 )
(BLAST)

001: MMKLIVVFVI SSLLFATQFS NGDELESQAQ APAIHKNGGE GSLKPEECPK ACEYRCSATS HRKPCLFFCN KCCNKCLCVP SGTYGHKEEC PCYNNWTTKE
101: GGPKCP

Arabidopsis Description

GASA12Gibberellin-regulated protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q6GKX7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.