Factsheet for GSMUA_Achr5P16080_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P07810_001	Banana	cytosol	47.44	78.72
Solyc04g078200.2.1	Tomato	extracellular	57.69	69.23
KRH52061	Soybean	extracellular	65.38	57.95
GSMUA_Achr6P11160_001	Banana	extracellular	65.38	56.04
GSMUA_Achr10P...	Banana	extracellular	62.82	53.85
PGSC0003DMT400055426	Potato	extracellular	60.26	53.41
Bra019917.1-P	Field mustard	cytosol	44.87	53.03
Solyc12g042520.1.1	Tomato	extracellular	58.97	52.27
GSMUA_Achr6P02260_001	Banana	extracellular	60.26	51.65
VIT_18s0001g09460.t01	Wine grape	extracellular	57.69	51.14
KRH35705	Soybean	extracellular	58.97	51.11
PGSC0003DMT400037423	Potato	extracellular	56.41	50.0
KRG91068	Soybean	extracellular	57.69	50.0
Solyc12g042500.1.1	Tomato	extracellular	56.41	50.0
VIT_03s0091g00390.t01	Wine grape	extracellular	56.41	50.0
CDX80223	Canola	extracellular	57.69	48.91
KRH15429	Soybean	extracellular	55.13	48.86
Solyc08g005620.2.1	Tomato	extracellular	55.13	48.31
AT5G59845.1	Thale cress	extracellular	55.13	48.31
GSMUA_Achr10P...	Banana	extracellular	56.41	47.83
CDY20958	Canola	extracellular	53.85	47.73
CDY20617	Canola	extracellular	53.85	47.73
CDX71072	Canola	extracellular	55.13	47.25
PGSC0003DMT400047535	Potato	extracellular	53.85	47.19
Bra020281.1-P	Field mustard	extracellular	52.56	47.13
CDY31591	Canola	extracellular	55.13	46.74
CDX80222	Canola	extracellular	55.13	46.74
Bra002526.1-P	Field mustard	extracellular	55.13	46.74
KRH05612	Soybean	extracellular	52.56	46.59
CDX88727	Canola	extracellular	53.85	46.15
Solyc01g107370.2.1	Tomato	extracellular	52.56	46.07
PGSC0003DMT400066182	Potato	extracellular	52.56	46.07
CDY09248	Canola	extracellular	52.56	46.07
CDY31590	Canola	extracellular	53.85	45.65
Bra002525.1-P	Field mustard	extracellular	53.85	45.65
AT2G39540.1	Thale cress	extracellular	50.0	44.83
CDY50148	Canola	extracellular	55.13	44.79
AT1G10588.1	Thale cress	extracellular	51.28	44.44
GSMUA_Achr11P...	Banana	cytosol	41.03	43.84
CDY72009	Canola	extracellular	48.72	43.18
CDY22975	Canola	extracellular	52.56	42.27
CDX93402	Canola	endoplasmic reticulum, extracellular	48.72	40.43
Bra013115.1-P	Field mustard	extracellular	53.85	39.62
CDX93153	Canola	extracellular	53.85	39.62
CDX89647	Canola	extracellular	53.85	39.62
Bra039830.1-P	Field mustard	extracellular	52.56	38.32
CDY52417	Canola	extracellular	52.56	37.96
VIT_07s0129g00580.t01	Wine grape	extracellular	61.54	37.8
CDY54472	Canola	extracellular	52.56	37.61
AT2G14900.1	Thale cress	extracellular	48.72	35.19
GSMUA_Achr6P02710_001	Banana	extracellular	43.59	31.19
GSMUA_Achr7P18070_001	Banana	extracellular	41.03	29.36
GSMUA_Achr7P21680_001	Banana	extracellular	35.9	27.45
GSMUA_Achr11P...	Banana	extracellular	43.59	26.98
GSMUA_Achr4P02320_001	Banana	extracellular	39.74	26.96
GSMUA_Achr9P27170_001	Banana	endoplasmic reticulum, extracellular, plastid	41.03	25.2
GSMUA_Achr8P22060_001	Banana	extracellular	37.18	23.97

Protein Annotations

EnsemblPlants:GSMUA_Achr5P16080_001	EnsemblPlants:GSMUA_Achr5T16080_001	EnsemblPlantsGene:GSMUA_Achr5G16080_001	InterPro:GASA	PANTHER:PTHR23201	PANTHER:PTHR23201:SF10
PFAM:PF02704	SignalP:SignalP-noTM	UniParc:UPI000294DA0B	UniProt:M0SYY7	MapMan:11.10.2.1.1	:

Description

Snakin-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G16080_001]

Coordinates

chr5:+:12855685..12855921

Molecular Weight (calculated)

8655.7 Da

IEP (calculated)

8.430

GRAVY (calculated)

-0.173

Length

78 amino acids

Sequence
(BLAST)

1: MVLVWLPAPP FLLASAFCES KCKVRCAKAG VMDRCLRCCG VCFEECKCVP SGTYGNKDEC PCYRDDVTKG KNRKPKCP

Best Arabidopsis Sequence Match ( AT5G59845.1 )
(BLAST)

1: MKFPAVKVLI ISLLITSSLF ILSTADSSPC GGKCNVRCSK AGRQDRCLKY CNICCEKCNY CVPSGTYGNK DECPCYRDMK NSKGTSKCP

Arabidopsis Description

GASA10Gibberellin-regulated protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFM2]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.