Factsheet for Solyc03g097840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400084471	Potato	cytosol, mitochondrion, plastid	19.6	94.52
VIT_17s0000g00400.t01	Wine grape	extracellular	71.88	83.5
Solyc06g072510.2.1	Tomato	plastid	82.39	80.11
Solyc02g094470.2.1	Tomato	plastid	77.84	76.54
Zm00001d052155_P001	Maize	cytosol	28.69	76.52
Zm00001d018187_P001	Maize	mitochondrion, plastid	78.69	75.68
Zm00001d018183_P001	Maize	plastid	78.69	75.68
Os04t0448800-01	Rice	plasma membrane	76.7	75.0
EES07586	Sorghum	plastid	78.98	74.93
KRH41081	Soybean	plastid	75.57	74.93
KRH59763	Soybean	endoplasmic reticulum	75.57	74.09
Os02t0767500-01	Rice	mitochondrion	76.99	73.64
Os06t0210500-01	Rice	mitochondrion	76.99	73.64
EER88051	Sorghum	plastid	77.56	73.58
TraesCS3B01G060300.1	Wheat	plastid	75.85	73.55
TraesCS2A01G316900.1	Wheat	mitochondrion, plastid	77.27	73.51
TraesCS2D01G314800.1	Wheat	mitochondrion, plastid	76.14	72.83
EES10896	Sorghum	plastid	75.0	72.73
TraesCS2B01G335500.1	Wheat	plastid	76.14	72.63
TraesCS6D01G310300.1	Wheat	golgi, plastid, unclear	77.27	72.53
TraesCS6A01G331000.1	Wheat	golgi	77.56	72.22
TraesCS6B01G361800.1	Wheat	golgi	77.27	72.15
CDY37906	Canola	plastid	68.75	66.12
AT3G48850.1	Thale cress	plastid	68.18	66.12
CDX87003	Canola	plastid	68.47	65.85
HORVU2Hr1G078800.1	Barley	cytosol, mitochondrion, plastid	75.57	62.88
TraesCS4B01G215600.2	Wheat	cytosol, endoplasmic reticulum, mitochondrion	65.91	62.87
TraesCS4D01G216100.2	Wheat	cytosol, endoplasmic reticulum, mitochondrion	65.91	62.87
EER95137	Sorghum	cytosol, mitochondrion, plastid	65.34	61.99
HORVU6Hr1G080480.4	Barley	mitochondrion	75.28	61.2
Bra019570.1-P	Field mustard	plastid	68.75	60.8
Zm00001d028528_P001	Maize	cytosol	64.49	59.42
TraesCS4A01G088600.2	Wheat	cytosol, extracellular, mitochondrion	65.91	53.58
Solyc03g032030.2.1	Tomato	cytosol	42.33	45.99
GSMUA_Achr9P27150_001	Banana	mitochondrion	29.83	45.26
HORVU4Hr1G061260.1	Barley	cytosol, mitochondrion	65.91	44.79

Protein Annotations

Gene3D:1.50.40.10	MapMan:24.2.13	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006810	GO:GO:0006839
GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015114	GO:GO:0016020
GO:GO:0016021	GO:GO:0035435	InterPro:IPR018108	InterPro:IPR023395	UniProt:K4BJK1	InterPro:Mitochondrial_sb/sol_carrier
InterPro:Mt_carrier_dom_sf	PFAM:PF00153	PFscan:PS50920	PANTHER:PTHR24089	PANTHER:PTHR24089:SF460	SUPFAM:SSF103506
EnsemblPlantsGene:Solyc03g097840.2	EnsemblPlants:Solyc03g097840.2.1	UniParc:UPI000276858B	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:60168208..60170516

Molecular Weight (calculated)

37658.5 Da

IEP (calculated)

9.393

GRAVY (calculated)

0.092

Length

352 amino acids

Sequence
(BLAST)

001: MAFSDRKSLI PSYLYSTTSA NSSKNLSSAF DNHDNMDKKN LLIAAPKEGS GYKVEMYSPA FYAASTIGGI LSCGLTHTAV TPLDLVKCNM QIDPAKFKSI
101: SSGFGILLKE QGIRGLFRGW APTLLGYSAQ GACKYGFYEY FKKYYSDLAG AENAVKYKTL IYLAGSASAE VIADVALCPF EAVKVRVQTQ PGFARGLSDG
201: LPKFVKAEGA AGLYKGIVPL WGRQIPYTMM KFASFETIVE QLYKHAIPTP KDQCSNTTQL GVSFAGGYLA GILCAVVSHP ADNLVSFLNN AKGATVGDAV
301: NKLGVWGLCT RGLPLRIFMI GTLTGAQWGI YDSFKVFVGL PTTGGAAPPA QK

Best Arabidopsis Sequence Match ( AT5G14040.1 )
(BLAST)

001: MESPKNSLIP SFLYSSSSSP RSFLLDQVLN SNSNAAFEKS PSPAPRSSPT SMISRKNFLI ASPTEPGKGI EMYSPAFYAA CTFGGILSCG LTHMTVTPLD
101: LVKCNMQIDP AKYKSISSGF GILLKEQGVK GFFRGWVPTL LGYSAQGACK FGFYEYFKKT YSDLAGPEYT AKYKTLIYLA GSASAEIIAD IALCPFEAVK
201: VRVQTQPGFA RGMSDGFPKF IKSEGYGGLY KGLAPLWGRQ IPYTMMKFAS FETIVEMIYK YAIPNPKSEC SKGLQLGVSF AGGYVAGVFC AIVSHPADNL
301: VSFLNNAKGA TVGDAVKKIG MVGLFTRGLP LRIVMIGTLT GAQWGLYDAF KVFVGLPTTG GVAPAPAIAA TEAKA

Arabidopsis Description

MPT3Mitochondrial phosphate carrier protein 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FMU6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.