Factsheet for Solyc05g056270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060303	Potato	plastid	97.03	97.03
KRH01809	Soybean	peroxisome	42.77	73.22
Zm00001d003974_P001	Maize	peroxisome	18.42	72.66
OQU81389	Sorghum	peroxisome	41.98	68.17
TraesCS2A01G282900.1	Wheat	golgi, unclear	42.97	67.6
KRH46882	Soybean	plastid	61.78	66.95
Os04t0386600-01	Rice	peroxisome	49.7	64.52
VIT_05s0124g00020.t01	Wine grape	plastid	63.37	63.37
CDY14871	Canola	plastid	57.62	61.13
CDX83497	Canola	plastid	57.62	60.88
Bra000294.1-P	Field mustard	plastid	57.43	60.67
TraesCS2B01G300200.2	Wheat	mitochondrion, peroxisome	43.37	60.16
TraesCS2D01G281600.1	Wheat	peroxisome	44.16	60.11
TraesCS2A01G358900.2	Wheat	plastid	57.03	58.9
HORVU2Hr1G069600.1	Barley	peroxisome	10.69	58.7
AT2G43180.1	Thale cress	plastid	55.64	58.66
TraesCS2D01G357800.1	Wheat	plastid	56.04	57.87
Zm00001d025893_P001	Maize	plastid	56.04	57.76
HORVU2Hr1G069590.4	Barley	peroxisome, plastid	32.28	57.39
Os04t0504600-01	Rice	plastid	56.63	56.86
EES11084	Sorghum	plastid	55.25	56.59
GSMUA_Achr11P...	Banana	plastid	56.04	56.04
KRH01804	Soybean	mitochondrion	22.97	55.24
HORVU2Hr1G087400.1	Barley	peroxisome	53.86	53.97
TraesCS2B01G378300.1	Wheat	peroxisome	56.63	43.4
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	14.26	43.11
GSMUA_Achr10P...	Banana	cytosol	7.72	38.61

Protein Annotations

EnsemblPlants:Solyc05g056270.2.1	EnsemblPlantsGene:Solyc05g056270.2	Gene3D:3.20.20.60	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:Pyrv/PenolPyrv_Kinase-like_dom
PANTHER:PTHR42905	PANTHER:PTHR42905:SF2	PFAM:PF13714	SUPFAM:SSF51621	UniParc:UPI0002765704	UniProt:K4C2V1
MapMan:50.5.4	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:65617486..65624996

Molecular Weight (calculated)

54651.3 Da

IEP (calculated)

6.940

GRAVY (calculated)

-0.194

Length

505 amino acids

Sequence
(BLAST)

001: MNSASISSIE FRTFSNLPSR RTAYLTHRRV AETLHQSASS LPERVGSSSS KAGRKSFIRY TVSASYGDKE SGSVNSNEFT SPAKALRKLL ESPGVHQGPA
101: CFDALSAKLV ERAGFDFCFT TGFGISAARL GLPDAGLISY GEMVAQGLEI TQAVSIPVIG DGDNGYGNAM NVKRTVKGYI RAGFGGIILE DQVSPKACGH
201: TRGRKVVSRE EAIMRIKAAV DARKESGSDI VIVARTDARQ AVSFEEAIWR ARALADAGAD VLFIDALASK EEMKAFCDVY PLVPKLANML EGGGKTPIFT
301: PIELEELGYK LVAYPLSLIG VSIGAMQDAL SAIKGGRIPS PGSMPSFEEL KEILGFNTYY EEEKRYATTS SQLPSRKGDF SSNSNEYGVQ PGIQADRVQR
401: TQIPENPVEV LIPEVYDRFS GEGKKGNFSM AWSRKLRVKI TGKDGFEKLD IRIPAGFLEG ITNIVPALVG VNIKSLLDEA TLEEGGKQLL DFQDTMGDRI
501: QVILE

Best Arabidopsis Sequence Match ( AT2G43180.3 )
(BLAST)

001: MAALSFCSSS PPRILHKQSK SSFFPSSASS SFTQTVGELF ANPFSVSRRF RGAVNSTVVS DESGNAKLPS SPAKKLRNIM QSPGVLQGPC CFDALSAKLI
101: ERAGFPYCIT SGFSISASRL GLPDKGLISY GEMVDQGQQI TQSVSIPVIG DGGNGYGNAM NVKRTVKGYI KAGFAGIIIN DEVCCENTKS ERRVVSREEA
201: VMRVKAAVDA RRECDSDIVI VAQTDSREAI SLEESLIRAR AFTDAGADVL SVDSLVSREE MKAFCNVYPL VPKLANMLES GGKIPILNPL ELEEIGYKLV
301: AYPISLIGVS IQAMQDALLA IKGGRIPPPG SMASLEEIGE ILGFDTYEEE EKRYATSSSD RVSSSSVYRN QRVAKDDPEQ REDLIVEVIT PEVYNEPRNP
401: FSRIWSRSLR IKIIGRDGFE KLDVRIPAGF LEGVTNIVPA LGGVNLKQLM DDAADEVGGK ILLDFKDTAG DRIQVFLE

Arabidopsis Description

Phosphoenolpyruvate carboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.