Factsheet for VIT_05s0124g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01809	Soybean	peroxisome	42.97	73.56
Zm00001d003974_P001	Maize	peroxisome	18.61	73.44
KRH46882	Soybean	plastid	64.16	69.53
TraesCS2A01G282900.1	Wheat	golgi, unclear	43.76	68.85
OQU81389	Sorghum	peroxisome	42.38	68.81
Os04t0386600-01	Rice	peroxisome	49.9	64.78
PGSC0003DMT400060303	Potato	plastid	63.96	63.96
Solyc05g056270.2.1	Tomato	plastid	63.37	63.37
GSMUA_Achr11P...	Banana	plastid	63.17	63.17
CDY14871	Canola	plastid	59.01	62.6
Zm00001d025893_P001	Maize	plastid	60.4	62.24
EES11084	Sorghum	plastid	60.59	62.07
CDX83497	Canola	plastid	58.61	61.92
KRH01804	Soybean	mitochondrion	25.74	61.9
TraesCS2A01G358900.2	Wheat	plastid	59.8	61.76
Bra000294.1-P	Field mustard	plastid	58.42	61.72
Os04t0504600-01	Rice	plastid	61.39	61.63
TraesCS2D01G357800.1	Wheat	plastid	59.6	61.55
TraesCS2B01G300200.2	Wheat	mitochondrion, peroxisome	44.16	61.26
AT2G43180.1	Thale cress	plastid	57.82	60.96
TraesCS2D01G281600.1	Wheat	peroxisome	44.55	60.65
HORVU2Hr1G069590.4	Barley	peroxisome, plastid	34.06	60.56
HORVU2Hr1G069600.1	Barley	peroxisome	10.89	59.78
HORVU2Hr1G087400.1	Barley	peroxisome	56.83	56.94
TraesCS2B01G378300.1	Wheat	peroxisome	60.2	46.13
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	13.27	40.12
GSMUA_Achr10P...	Banana	cytosol	7.13	35.64

Protein Annotations

EntrezGene:100244697	wikigene:100244697	Gene3D:3.20.20.60	MapMan:50.5.4	ProteinID:CCB61575	ProteinID:CCB61575.1
UniProt:F6I3Q7	EMBL:FN596743	GO:GO:0003674	GO:GO:0003824	EntrezGene:LOC100244697	wikigene:LOC100244697
PFAM:PF13714	PANTHER:PTHR42905	PANTHER:PTHR42905:SF2	InterPro:Pyrv/PenolPyrv_Kinase-like_dom	SUPFAM:SSF51621	TIGR:TC66925
UniParc:UPI00015CC232	ArrayExpress:VIT_05s0124g00020	EnsemblPlantsGene:VIT_05s0124g00020	EnsemblPlants:VIT_05s0124g00020.t01	unigene:Vvi.12235	RefSeq:XP_002267641
RefSeq:XP_002267641.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:20385126..20410151

Molecular Weight (calculated)

54636.3 Da

IEP (calculated)

7.039

GRAVY (calculated)

-0.170

Length

505 amino acids

Sequence
(BLAST)

001: MLKASAAVIK SPNFSIPTLS SFHRQAHSTP LSSSSSLIAS NFKSGSPLQR LLLLPKMSTS FHSSTEPRPI PPLSAAYGDQ APLPEAPAKV LRRILDSPGV
101: HQGPACFDAL SAQLVERAGF QYCFTSGFSI SAARLGLPDV GLISYGEMLD QGRQITQAVS IPVIGDGDNG YGNAMNVKRT VKDFIRAGFA GIILEDQVSP
201: KACGHTRGRK VVSREEAVMR IKAAIDARKE TGSDIVIVAR TDSRQAVSFD ESLWRSRAFA SAGADVLFID ALSSREEMKA FCEIAPFVPK MANMLEGGGK
301: TPILNPIELE DVGYKIVVYP LSLIGVSIRA MQDALRAIKG GRIPSPGSMP TFEEIKETLG FNSYYEEEKR YATSKGQVSW QRASSNTYSS QQRAQDDTQQ
401: RGQNSQDPVV EVLTPDAYYG PDGSKVPFAG IWSRTLRIKI TGRDGIDKLD VRIPAGFLEG ITNIVPALGG VNIKELLDDA AEELGGKLLI DFNDAMGDRI
501: QVFLE

Best Arabidopsis Sequence Match ( AT2G43180.1 )
(BLAST)

001: MAALSFCSSS PPRILHKQSK SSFFPSSASS SFTQTVGELF ANPFSVSRRF RGAVNSTVVS DESGNAKLPS SPAKKLRNIM QSPGVLQGPC CFDALSAKLI
101: ERAGFPYCIT SGFSISASRL GLPDKGLISY GEMVDQGQQI TQSVSIPVIG DGGNGYGNAM NVKRTVKGYI KAGFAGIIIN DEVCCENTKS ERRVVSREEA
201: VMRVKAAVDA RRECDSDIVI VAQTDSREAI SLEESLIRAR AFTDAGADVL SVDSLVSREE MKAFCNVYPL VPKLANMLES GGKIPILNPL ELEEIGYKLV
301: AYPISLIGVS IQAMQDALLA IKGGRIPPPG SMASLEEIGE ILGFDTYEEE EKRYATSSSD REVSSSSVYR NQRVAKDDPE QREDLIVEVI TPEVYNEPRN
401: PFSRIWSRSL RIKIIGRDGF EKLDVRIPAG FLEGVTNIVP ALGGVNLKQL MDDAADEVGG KILLDFKDTA GDRIQVFLE

Arabidopsis Description

Phosphoenolpyruvate carboxylase family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.