Factsheet for Solyc12g042480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037425	Potato	endoplasmic reticulum, extracellular	93.55	94.12
Solyc12g045020.1.1	Tomato	endoplasmic reticulum	76.81	77.28
Solyc04g054250.2.1	Tomato	endoplasmic reticulum, extracellular	74.19	74.8
Solyc04g050620.2.1	Tomato	endoplasmic reticulum	72.58	72.87
Solyc04g054260.2.1	Tomato	endoplasmic reticulum, extracellular	67.74	67.2
Solyc04g011680.1.1	Tomato	endoplasmic reticulum, extracellular	60.48	60.12
Solyc04g011690.2.1	Tomato	endoplasmic reticulum, golgi	60.28	59.68
VIT_07s0031g01380.t01	Wine grape	mitochondrion	55.24	57.68
VIT_07s0031g01390.t01	Wine grape	endoplasmic reticulum, extracellular	57.26	57.03
KRH43296	Soybean	endoplasmic reticulum, mitochondrion	54.84	55.17
Solyc04g054220.2.1	Tomato	extracellular, golgi	54.64	54.86
KRH43298	Soybean	endoplasmic reticulum, golgi	55.04	54.6
VIT_07s0031g01370.t01	Wine grape	plastid	41.13	54.26
KRH59431	Soybean	endoplasmic reticulum, mitochondrion	54.23	54.12
KRH43299	Soybean	endoplasmic reticulum, extracellular	53.02	52.81
Solyc04g083150.1.1	Tomato	nucleus	45.56	45.02
Solyc03g122360.2.1	Tomato	endoplasmic reticulum, golgi	37.5	36.76
Solyc03g122350.2.1	Tomato	endoplasmic reticulum	37.3	36.42
Solyc03g115220.2.1	Tomato	extracellular, golgi	36.29	35.02
Solyc11g066580.1.1	Tomato	endoplasmic reticulum, golgi	35.28	34.25
Solyc04g071820.2.1	Tomato	endoplasmic reticulum, golgi	33.27	32.74
Solyc04g071800.2.1	Tomato	endoplasmic reticulum, golgi	33.27	32.42
Solyc04g071780.2.1	Tomato	endoplasmic reticulum, golgi	33.06	32.41
Solyc10g009390.2.1	Tomato	endoplasmic reticulum, extracellular	36.09	32.19
Solyc10g078230.1.1	Tomato	endoplasmic reticulum, extracellular	32.06	31.24
Solyc11g030730.1.1	Tomato	endoplasmic reticulum, golgi	31.25	30.94
Solyc04g071790.1.1	Tomato	golgi	31.25	30.39
Solyc10g078220.1.1	Tomato	endoplasmic reticulum	30.85	30.24
Solyc10g078240.1.1	Tomato	endoplasmic reticulum, extracellular	30.24	29.47
Solyc01g009370.1.1	Tomato	extracellular, golgi	30.04	29.39
Solyc01g096670.2.1	Tomato	endoplasmic reticulum, extracellular	29.84	28.79

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_CS	InterPro:Cyt_P450_E_grp-I
InterPro:Cyt_P450_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016020	GO:GO:0016491
GO:GO:0016705	GO:GO:0016709	GO:GO:0019748	GO:GO:0020037	GO:GO:0044550	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036396	UniProt:K4DF40	PFAM:PF00067	PRINTS:PR00385	PRINTS:PR00463
ScanProsite:PS00086	PANTHER:PTHR24298	PANTHER:PTHR24298:SF157	SUPFAM:SSF48264	EnsemblPlantsGene:Solyc12g042480.1	EnsemblPlants:Solyc12g042480.1.1
UniParc:UPI000276AB26	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:40096542..40098149

Molecular Weight (calculated)

57259.1 Da

IEP (calculated)

7.362

GRAVY (calculated)

-0.134

Length

496 amino acids

Sequence
(BLAST)

001: MSLIWEVVVV VSIVYVLYEL LNIHKRKKLP PGPRGLPIVG HLHLLGKNPH HDFQNLAKKY GPIMYMRLGL VPTIVVSSSD VAEKFLKTYD HIFANKPHNE
101: AAHYLAYGQK NIIFAKYGPY WRNMRKLCTQ HLLTNQKINS FQSLRSQQVE LMIESLQNES RGERVVVDLS ERVASLNANM TCLMVFGKKY MDEDFDKRGF
201: KAVLQEVVHL AAITNLGDFF PFLGVIDLQG LTRRLKDLSK VFDEFLEKII DEHVESHDEN QTKDFVHTML EFMQSGKAEF QFDRIHIKAV LFDMIVAAID
301: TSATTIDWIL TELLRHPHVM KKLQIEIKQV VGLERMVKES DLENLKYLDM VVKEGMRLHS VVPVTQREAM EDCVIDGFNI RKGSRIMINH YAIQRDPNLW
401: SEPEKFLPER FIGSNIDVRG RDFQLLPFNS GRRSCPAIQL GIIVVRLVVA QLVHCFDWEL PNGMQPCDLD LEEHFGIVTS KEKHLMAIPT CRLNEQ

Best Arabidopsis Sequence Match ( AT3G26300.1 )
(BLAST)

001: MTNIWLLSLI FVICILVAVF NHKNRRNYQR TPPSPPGCPI IGNLHQLGEL PHQSLWKLSK KYGPVMLLKL GRVPTVIVSS SETAKQALKI HDLHCCSRPG
101: FAGARELSYN YLDIAFSPYD DYWKEVRKLA VQELFSSKQV HSIQPIKDEE VKKLIDSISE SAAQKTPINL NKTLLALTVS VVCRTAFSVN FEGTVLNSER
201: FNNIVREALE MLGSFSASDF IPYVGRIIDL LTGLQGRRER SMRDLDAFYE QMFDLHKQKK EEGSEDFVDL LLRLEKEEAV LGNDKLTRNH IKAILMDVLL
301: AGMDTSAITM TWAMAELAKN PRVMKKVQSE IRSQIKNKER ISFDDTDKLE YLKMVIKETW RLHPTTPLLI PREAMSEFEI NGYTIPVKTR LHVNVWAIGR
401: DPDTWKDPEV FLPERFTDNN IDAKGQHFEL LPFGGGRRMC PAVYMGTTMV EFGLANLLYH FDWKLPEGMK VDDIDMEEAP GLTVNKKNEL ILVPTKFLDP

Arabidopsis Description

CYP71B34Cytochrome P450 71B34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIP6]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.