Factsheet for TraesCS1A01G078800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, plastid, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G081200.1	Wheat	cytosol	97.72	97.72
TraesCS1B01G097400.1	Wheat	cytosol	97.72	97.72
TraesCS1B01G097200.1	Wheat	cytosol	97.72	97.72
TraesCS1A01G078900.1	Wheat	cytosol	91.32	91.32
Os01t0371200-01	Rice	plasma membrane	84.02	84.02
EES12862	Sorghum	cytosol	82.19	78.6
EES05217	Sorghum	cytosol	77.63	75.89
HORVU1Hr1G017050.1	Barley	plastid	72.15	70.54
TraesCS7A01G191500.1	Wheat	cytosol	50.68	69.38
TraesCS2A01G045400.1	Wheat	cytosol	77.17	68.42
GSMUA_Achr2P02330_001	Banana	cytosol	62.1	62.96
TraesCS5A01G432600.1	Wheat	cytosol	61.19	61.47
TraesCS3A01G302100.1	Wheat	cytosol	59.36	61.32
TraesCS5A01G024100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.27	59.46
TraesCS3A01G302300.1	Wheat	cytosol	58.45	58.72
TraesCS1A01G013900.1	Wheat	cytosol	55.71	56.74
TraesCS1A01G102700.1	Wheat	endoplasmic reticulum	57.53	56.5
TraesCS7A01G525700.1	Wheat	cytosol	55.71	56.22
TraesCS4A01G349700.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	56.16	55.41
TraesCS1A01G102900.1	Wheat	cytosol	56.62	54.63
TraesCS7A01G525600.1	Wheat	cytosol	53.42	54.42
VIT_07s0104g01800.t01	Wine grape	cytosol	53.42	53.92
TraesCS3A01G309100.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.47	53.67
TraesCS5A01G024000.1	Wheat	cytosol	57.53	53.39
VIT_07s0104g01810.t01	Wine grape	cytosol	52.51	53.0
TraesCS3A01G309000.2	Wheat	cytosol	62.1	52.51
TraesCS1A01G103000.1	Wheat	extracellular	53.88	52.21
TraesCS1A01G102800.1	Wheat	cytosol	51.6	50.45
KRH71551	Soybean	cytosol	49.77	49.55
KRH31902	Soybean	cytosol	49.32	49.54
Bra014394.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.32	49.32
CDX89147	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.32	49.32
TraesCS5A01G408300.1	Wheat	cytosol, peroxisome, plastid	49.32	49.09
AT3G62760.1	Thale cress	cytosol	48.4	48.4
Os01t0370900-00	Rice	mitochondrion	54.79	48.39
CDX93963	Canola	cytosol	47.95	47.95
TraesCS3A01G452900.1	Wheat	golgi	43.84	45.07
TraesCS3A01G452800.1	Wheat	cytosol	41.55	41.36
TraesCS5A01G502500.1	Wheat	endoplasmic reticulum, peroxisome	37.9	36.73
TraesCS5A01G502400.1	Wheat	cytosol	35.16	34.53
TraesCS5A01G502300.1	Wheat	cytosol	32.42	31.84
TraesCS1A01G203900.1	Wheat	cytosol	30.59	26.27
TraesCS3A01G055800.1	Wheat	cytosol	31.96	9.33
CDY18134	Canola	nucleus	0.0	0.0

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	MapMan:18.8.1.5
Gene3D:3.40.30.10	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GST_C
InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987
PFAM:PF00043	PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR43900	PANTHER:PTHR43900:SF1
SUPFAM:SSF47616	SUPFAM:SSF52833	InterPro:Thioredoxin-like_sf	EnsemblPlantsGene:TraesCS1A01G078800	EnsemblPlants:TraesCS1A01G078800.1	TIGR:cd03053
TIGR:cd03187	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:61575846..61576813

Molecular Weight (calculated)

24988.3 Da

IEP (calculated)

6.401

GRAVY (calculated)

-0.121

Length

219 amino acids

Sequence
(BLAST)

001: MAPVKVFGPA MSTNVARVLV CLEEVGAEYE VVDIDFKAME HKSPEHLVRN PFGQIPAFQD GDLLLFESRA IAKYVLRKYK KNEVDLLREG NLKEAAMVDV
101: WTEVDAHTYN PAISPIVYEC LINPLMRGLP TNQTVVDESL EKLKKVLEVY EARLSQHEYL AGDFVSFADL NHFPYTFYFM ATPHAALFDS YPHVKAWWER
201: LMARPAVKKL AAQMVPKKP

Best Arabidopsis Sequence Match ( AT3G62760.1 )
(BLAST)

001: MAMKLYGDEM SACVARVLLC LHEKNTEFEL VPVNLFACHH KLPSFLSMNP FGKVPALQDD DLTLFESRAI TAYIAEKHRD KGTDLTRHED PKEAAIVKLW
101: SEVEAHHFNP AISAVIHQLI VVPLQGESPN AAIVEENLEN LGKILDVYEE RLGKTKYLAG DTYTLADLHH VPYTYYFMKT IHAGLINDRP NVKAWWEDLC
201: SRPAFLKVSP GLTVAPTTN

Arabidopsis Description

GSTF13Glutathione S-transferase F13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.