Factsheet for TraesCS1B01G215800.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

endoplasmic reticulum 3
plasma membrane 5
vacuole 3
golgi 4
extracellular 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

gfp, msms PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G204900.1	Wheat	golgi, plasma membrane, vacuole	99.87	99.87
TraesCS1A01G201600.2	Wheat	plasma membrane	99.73	99.73
HORVU1Hr1G052040.1	Barley	vacuole	98.79	98.66
Os10t0539900-01	Rice	plasma membrane	90.98	91.35
EER94578	Sorghum	golgi, plasma membrane, vacuole	90.17	90.54
Zm00001d029762_P004	Maize	golgi, plasma membrane, vacuole	87.62	87.15
GSMUA_Achr4P25880_001	Banana	plasma membrane	72.81	76.85
GSMUA_Achr1P02850_001	Banana	plasma membrane	65.28	76.74
GSMUA_Achr5P15870_001	Banana	plasma membrane	75.91	76.42
TraesCS6B01G215800.1	Wheat	plasma membrane	75.64	75.54
GSMUA_AchrUn_...	Banana	plasma membrane	59.89	73.92
VIT_07s0031g02270.t01	Wine grape	plasma membrane	71.6	71.7
PGSC0003DMT400048038	Potato	plasma membrane	68.51	70.5
Solyc03g032040.2.1	Tomato	plasma membrane	68.51	70.21
Solyc02g082410.2.1	Tomato	plasma membrane	65.81	69.17
PGSC0003DMT400035507	Potato	endoplasmic reticulum, plasma membrane, vacuole	66.89	68.74
TraesCS7B01G481200.1	Wheat	plasma membrane	65.81	64.68
TraesCS6B01G467700.1	Wheat	plasma membrane	56.8	58.05
TraesCS4B01G322000.2	Wheat	cytosol, peroxisome, plasma membrane	52.76	52.97
TraesCS4B01G149600.1	Wheat	plasma membrane	22.34	41.92
TraesCS1B01G211800.1	Wheat	plasma membrane	18.84	28.28
TraesCS5B01G498000.2	Wheat	mitochondrion, plastid	19.65	25.84

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.1.4	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	InterPro:IPR020846
InterPro:MFS_dom	InterPro:MFS_sugar_transport-like	InterPro:MFS_trans_sf	PFAM:PF00083	PRINTS:PR00171	ScanProsite:PS00216
ScanProsite:PS00217	PFscan:PS50850	PANTHER:PTHR23500	PANTHER:PTHR23500:SF165	SUPFAM:SSF103473	InterPro:Sugar/inositol_transpt
InterPro:Sugar_transporter_CS	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G215800	EnsemblPlants:TraesCS1B01G215800.1	TIGR:cd06174	SEG:seg

Description

No Description!

Coordinates

chr1B:+:391572406..391575870

Molecular Weight (calculated)

79130.9 Da

IEP (calculated)

4.593

GRAVY (calculated)

0.438

Length

743 amino acids

Sequence
(BLAST)

001: MSGAVLVAIA ASIGNLLQGW DNATIAGAVL YIKKEFSLET QPLIEGLIVA MSLIGATVIT TFSGAVADAV GRRPLLIASS VLYFVSGLVM LWAPNVYVLL
101: LARLIDGFGI GLAVTLVPLY ISETAPTDIR GLLNTLPQFS GSGGMFLSYC MVFTMSLMPQ PDWRIMLGVL SIPSLMYFAL TVFYLPESPR WLVSKGRMAE
201: AKRVLQGLRG REDVSGEMAL LVEGLGVGKD THFEEYIIGP DDELADDGLA PDEEKLKLYG AEEGVSWIAR PVRGGGQSAL GSALGLMSRH GSMVSQGKSL
301: VDPLVTLFGS VHEKMPEVMG SMRSTLFPNF GSMFSVAEQQ QAKADWDAES HRDDEDYASD HGADDIEDSL NSPLISRQAT SVEGKEIAAP HGSIMGGVGR
401: SSSMQGGEAV SSMGIGGGWQ LAWKWTEREG ADGQKEGGFQ RIYLHEEGVS GDRRGSILSM PGGDIPPGGE YIQAAALVSQ PALYSKDLIE QQLAGPAMVH
501: PSEAVAKGTK WAELFEPGVK HALFVGIGLQ ILQQFAGING VLYYTPQILE QAGVGVLLSN IGLSSSSASI LISALTTLLM LPSIGIAMRL MDMSGRRFLL
601: LSTIPVLIVA LAVLVLVNVL DVGTMVHAAL STISVIVYFC FFVMGFGPIP NILCAEIFPT SVRGICIAIC ALTFWIGDII VTYTLPVMLN AIGLAGVFGI
701: YAVVCILAFV FVYMKVPETK GMPLEVITEF FSVGAKQGKE ATD

Best Arabidopsis Sequence Match ( AT4G35300.1 )
(BLAST)

001: MSGAVLVAIA AAVGNLLQGW DNATIAGAVL YIKKEFNLES NPSVEGLIVA MSLIGATLIT TCSGGVADWL GRRPMLILSS ILYFVGSLVM LWSPNVYVLL
101: LGRLLDGFGV GLVVTLVPIY ISETAPPEIR GLLNTLPQFT GSGGMFLSYC MVFGMSLMPS PSWRLMLGVL FIPSLVFFFL TVFFLPESPR WLVSKGRMLE
201: AKRVLQRLRG REDVSGEMAL LVEGLGIGGE TTIEEYIIGP ADEVTDDHDI AVDKDQIKLY GAEEGLSWVA RPVKGGSTMS VLSRHGSTMS RRQGSLIDPL
301: VTLFGSVHEK MPDTGSMRSA LFPHFGSMFS VGGNQPRHED WDEENLVGEG EDYPSDHGDD SEDDLHSPLI SRQTTSMEKD MPHTAHGTLS TFRHGSQVQG
401: AQGEGAGSMG IGGGWQVAWK WTEREDESGQ KEGGFKRIYL HQEGFPGSRR GSIVSLPGGD GTGEADFVQA SALVSQPALY SKDLLKEHTI GPAMVHPSET
501: TKGSIWHDLH DPGVKRALVV GVGLQILQQF SGINGVLYYT PQILEQAGVG ILLSNMGISS SSASLLISAL TTFVMLPAIA VAMRLMDLSG RRTLLLTTIP
601: ILIASLLVLV ISNLVHMNSI VHAVLSTVSV VLYFCFFVMG FGPAPNILCS EIFPTRVRGI CIAICALTFW ICDIIVTYSL PVLLKSIGLA GVFGMYAIVC
701: CISWVFVFIK VPETKGMPLE VITEFFSVGA RQAEAAKNE

Arabidopsis Description

TMT2TMT2 [Source:UniProtKB/TrEMBL;Acc:A0A178V1T0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.