Factsheet for TraesCS2A01G041400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G053800.1	Wheat	cytosol	96.88	96.72
TraesCS2D01G039700.2	Wheat	cytoskeleton, cytosol, peroxisome	96.55	95.29
TraesCS2A01G041300.1	Wheat	golgi	87.5	86.36
EES11732	Sorghum	cytosol, nucleus, plastid	79.93	78.64
Zm00001d024936_P002	Maize	mitochondrion	76.15	66.91
VIT_03s0097g00620.t01	Wine grape	cytosol, nucleus, plasma membrane	62.17	62.27
GSMUA_Achr4P18300_001	Banana	cytosol	40.62	62.06
KRH10653	Soybean	cytosol	59.87	59.97
Solyc01g106350.2.1	Tomato	cytosol	59.05	59.83
KRH21697	Soybean	cytosol	59.38	59.47
Solyc01g106360.2.1	Tomato	plastid	59.05	59.05
PGSC0003DMT400008086	Potato	cytosol, peroxisome, plastid	58.72	58.72
CDY46805	Canola	cytosol	56.74	56.46
CDX84527	Canola	cytosol	57.07	56.33
AT5G64440.1	Thale cress	cytosol, nucleus, peroxisome	55.92	56.01
CDY58262	Canola	cytosol	56.74	56.01
Bra031917.1-P	Field mustard	cytosol	56.25	55.79
CDY31318	Canola	cytosol	55.92	55.46
TraesCS1A01G413700.1	Wheat	golgi	42.27	42.2
TraesCS4A01G206800.1	Wheat	cytosol	41.28	41.49
TraesCS2A01G520300.1	Wheat	mitochondrion, plastid	22.7	25.51
TraesCS2A01G562400.1	Wheat	cytosol	14.64	19.52
TraesCS3A01G347600.4	Wheat	endoplasmic reticulum, golgi	17.43	16.64
TraesCS6A01G318800.1	Wheat	plastid	16.45	16.42
TraesCS4A01G270900.1	Wheat	endoplasmic reticulum	15.79	16.33

Protein Annotations

EnsemblPlants:TraesCS2A01G041400.1	EnsemblPlantsGene:TraesCS2A01G041400	Gene3D:3.90.1300.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004040
GO:GO:0016787	InterPro:AS_sf	InterPro:Amidase	InterPro:Amidase_CS	InterPro:Amidase_dom	InterPro:IPR036928
KEGG:00970+6.3.5.7	PANTHER:PTHR11895	PANTHER:PTHR11895:SF44	PFAM:PF01425	ScanProsite:PS00571	SEG:seg
SUPFAM:SSF75304	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2A:+:16729221..16741391

Molecular Weight (calculated)

66709.5 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.076

Length

608 amino acids

Sequence
(BLAST)

001: MGGKVKAMAP VEEVDVAAAR YEPLVLRAPR LTGFPLRAFV WLLESPLLGP LVTSVLKKQN NMTQMLQHTV IPDRPMFFPE FPPQEPEKGV VILGEDRDPV
101: ERVEETLQCL APYDPSTHFT SSDEKNPFLY WKIRDFAHAY RSGITTPSAV AEHVIAGVEE WNNKKPPMPM LIYFDADDLR KQAHASTKRF EQGSPISVLD
201: GIFFAVKDDI DCFPYPSKSG TTFFDKIRPV EKDAVLVARL RKCGVIFIGK ANMHELGIGV TGNNPNYGTV RNPHSIDRYT GASSSGPAAL VSSGLCSAAI
301: GTDAGGSVRI PSSLCGIVGL KTTFGRTDMT GVLCDCGTSE VASPLTASVE DSMLVYSALA GCRPMDKLTL RPLPLCVPNL VSSENNDILQ SVKVGKYTEW
401: FHDVSDIEIS NTCEDALSLL RNTFGCQIEE IILPELLEMR TAHLVTIGSE GFCQLNAHYQ EGRRTEMTLD TRGSLALFGS FTSADYVASQ RLRRRMMYYH
501: TEAFRKVDVI ATPTTGITAP RIPPSALKGE SDYIVSAKLM QFIVAGNLLG FPAITVPVGH DKQGLPIGLQ LIGRPWGEAS LLRVASAVEE LCLKRRNRPS
601: TFFDILKT

Best Arabidopsis Sequence Match ( AT5G64440.1 )
(BLAST)

001: MGKYQVMKRA SEVDLSTVKY KAETMKAPHL TGLSFKLFVN LLEAPLIGSL IVDYLKKDNG MTKIFRNTVI PEEPMFRPEF PSQEPEHDVV IVGEDESPID
101: RLETALKCLP QYDPSRSLHA DPVSSFRYWK IRDYAYAYRS KLTTPLQVAK RIISIIEEFG YDKPPTPFLI RFDANEVIKQ AEASTRRFEQ GNPISVLDGI
201: FVTIKDDIDC LPHPTNGGTT WLHEDRSVEK DSAVVSKLRS CGAILLGKAN MHELGMGTTG NNSNYGTTRN PHDPKRYTGG SSSGSAAIVA AGLCSAALGT
301: DGGGSVRIPS ALCGITGLKT TYGRTDMTGS LCEGGTVEII GPLASSLEDA FLVYAAILGS SSADRYNLKP SPPCFPKLLS HNGSNAIGSL RLGKYTKWFN
401: DVSSSDISDK CEDILKLLSN NHGCKVVEIV VPELEEMRAA HVISIGSPTL SSLTPYCEAG KNSKLSYDTR TSFAIFRSFS ASDYIAAQCL RRRLMEYHLN
501: IFKDVDVIVT PTTGMTAPVI PPDALKNGET NIQVTTDLMR FVLAANLLGF PAISVPVGYD KEGLPIGLQI MGRPWAEATV LGLAAAVEEL APVTKKPAIF
601: YDILNTN

Arabidopsis Description

FAAHFatty acid amide hydrolase [Source:UniProtKB/Swiss-Prot;Acc:Q7XJJ7]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.