Factsheet for TraesCS4A01G027500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G276600.1	Wheat	cytosol	95.68	95.23
HORVU4Hr1G073700.1	Barley	cytosol	93.29	93.73
TraesCS4B01G278300.1	Wheat	cytosol	95.68	91.3
Os03t0162000-01	Rice	peroxisome	77.22	76.48
OQU93186	Sorghum	cytosol	78.18	74.94
Zm00001d027759_P001	Maize	plastid	76.98	73.79
GSMUA_Achr4P03000_001	Banana	mitochondrion	54.44	60.37
GSMUA_Achr4P14860_001	Banana	peroxisome, plastid	57.79	60.1
TraesCS3A01G232600.1	Wheat	cytosol	52.04	53.06
TraesCS2A01G011500.1	Wheat	plastid	52.28	52.15
TraesCS4A01G313200.1	Wheat	mitochondrion	50.6	51.46
TraesCS2A01G533200.1	Wheat	mitochondrion	50.12	50.24
TraesCS5A01G102700.1	Wheat	cytosol	49.88	48.26
TraesCS3A01G280900.1	Wheat	peroxisome	50.12	47.83
TraesCS7A01G075400.1	Wheat	plasma membrane	43.17	47.0
TraesCS4A01G373500.1	Wheat	plasma membrane	42.45	46.21
TraesCS3A01G149500.1	Wheat	cytosol, peroxisome, plastid	47.96	45.35
TraesCS2A01G587600.1	Wheat	extracellular	31.18	44.83
TraesCS2A01G587300.1	Wheat	extracellular, plastid	30.94	44.79
TraesCS4A01G374400.1	Wheat	extracellular	27.58	44.4
TraesCS7A01G076100.1	Wheat	endoplasmic reticulum, extracellular, plastid	22.06	44.02
TraesCS7A01G076000.1	Wheat	endoplasmic reticulum, extracellular	26.38	42.97
TraesCS2A01G587400.1	Wheat	extracellular	39.09	42.67
TraesCS7A01G076200.1	Wheat	extracellular	39.09	42.67
TraesCS2A01G587200.1	Wheat	extracellular	38.85	42.41
TraesCS7A01G076300.1	Wheat	endoplasmic reticulum, extracellular	38.85	42.41
TraesCS2A01G587500.1	Wheat	extracellular, plastid	38.85	42.41
TraesCS4A01G325400.3	Wheat	extracellular	38.85	42.19
TraesCS4A01G379900.1	Wheat	extracellular	38.61	42.15
TraesCS4A01G374300.1	Wheat	extracellular, plastid	38.61	42.15
TraesCS7A01G459600.1	Wheat	extracellular	37.89	41.8
TraesCS4A01G374200.1	Wheat	extracellular, plastid	38.13	41.62
TraesCS5A01G217200.1	Wheat	cytosol, peroxisome, plasma membrane	39.57	41.46
TraesCS4A01G374500.1	Wheat	extracellular, plastid	37.17	40.58
TraesCS4A01G380000.1	Wheat	extracellular	32.37	40.54
TraesCS7A01G065600.1	Wheat	endoplasmic reticulum, extracellular	37.89	40.41

Protein Annotations

MapMan:11.2.1.1.2	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004499	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR036188	PFAM:PF00743
PIRSF:PIRSF000332	PRINTS:PR00368	PRINTS:PR00469	PANTHER:PTHR43539	PANTHER:PTHR43539:SF10	InterPro:Pyridine_nuc-diS_OxRdtase_2
SUPFAM:SSF51905	EnsemblPlantsGene:TraesCS4A01G027500	EnsemblPlants:TraesCS4A01G027500.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4A:+:19447812..19450310

Molecular Weight (calculated)

45256.5 Da

IEP (calculated)

8.553

GRAVY (calculated)

-0.073

Length

417 amino acids

Sequence
(BLAST)

001: MDAMQAQQGN GGTSPRQSSC IVNGPIIVGA GPSGLAVAAT LRRHSVPFTI LERSDGIADL WTNRTYGRLR LHLPKVFCEL PHVRFPPEFP TYPSKREFLR
101: YLHSYTAHFS ISPLFGRTVT RARFDEATSM WRVTAAADGG EVTEYVSKWL VVASGENAEA VVPRVKGRER FAGEVLHSSE YKSGERFKGK RVLVVGCGNS
201: GMEMCLDLCE HGAIPFMSVR SGVHVLPREM LGSSTFGIAM KLLRWLPVKL VDRFLLIVAR MILGDTEKYG LKRPKLGPLE IKEVTGKSPV LDVGAWSFIK
301: SGDIKVVAEV ESLGCNGARF VDGNEMALDA VIFATGYRSN VPSWLQDDGF FTEDGKPKAR CPSNWRGPNG LYCVGFSGRG LLGAGADALR AAADIAGSWQ
401: EEETVAAGAE AATISPV

Best Arabidopsis Sequence Match ( AT1G04610.1 )
(BLAST)

001: MYGNNNKKSI NITSMFQNLI PEGSDIFSRR CIWVNGPVIV GAGPSGLAVA AGLKREGVPF IILERANCIA SLWQNRTYDR LKLHLPKQFC QLPNYPFPDE
101: FPEYPTKFQF IQYLESYAAN FDINPKFNET VQSAKYDETF GLWRVKTISN MGQLGSCEFE YICRWIVVAT GENAEKVVPD FEGLEDFGGD VLHAGDYKSG
201: GRYQGKKVLV VGCGNSGMEV SLDLYNHGAN PSMVVRSAVH VLPREIFGKS TFELGVTMMK YMPVWLADKT ILFLARIILG NTDKYGLKRP KIGPLELKNK
301: EGKTPVLDIG ALPKIRSGKI KIVPGIIKFG KGKVELIDGR VLEIDSVILA TGYRSNVPSW LKDNDFFSDD GIPKNPFPNG WKGEAGLYAV GFTRKGLFGA
401: SLDAMSVAHD IANRWKEESK QQKKTAAARH RRCISHF

Arabidopsis Description

YUC3Probable indole-3-pyruvate monooxygenase YUCCA3 [Source:UniProtKB/Swiss-Prot;Acc:O23024]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.