CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d027759_P001	Maize	plastid	89.89	89.89
Os03t0162000-01	Rice	peroxisome	77.47	80.05
TraesCS4A01G027500.1	Wheat	plastid	74.94	78.18
HORVU4Hr1G073700.1	Barley	cytosol	74.25	77.83
TraesCS4D01G276600.1	Wheat	cytosol	74.94	77.8
TraesCS4B01G278300.1	Wheat	cytosol	73.79	73.46
GSMUA_Achr4P03000_001	Banana	mitochondrion	49.66	57.45
GSMUA_Achr4P14860_001	Banana	peroxisome, plastid	51.95	56.36
OQU87233	Sorghum	cytosol	51.26	52.84
EES11777	Sorghum	cytosol, peroxisome, plastid	50.11	51.66
KXG35000	Sorghum	plastid	50.11	51.29
KXG33311	Sorghum	cytosol	50.57	50.46
EES02224	Sorghum	peroxisome	47.13	48.12
EES16059	Sorghum	cytosol	48.97	47.54
EES15155	Sorghum	peroxisome	47.36	46.5
KXG32253	Sorghum	cytosol, peroxisome, vacuole	41.38	44.34
OQU79511	Sorghum	cytosol	45.52	43.9
OQU78863	Sorghum	extracellular	38.16	43.23
EES08388	Sorghum	extracellular	35.4	42.66
EES08387	Sorghum	extracellular, plasma membrane	36.32	42.02
OQU88910	Sorghum	plastid	18.16	34.8

Protein Annotations

MapMan:11.2.1.1.2	Gene3D:3.50.50.60	UniProt:A0A1Z5SBK3	InterPro:FAD/NAD-bd_sf	InterPro:Flavin_mOase	InterPro:Flavin_mOase-like
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004497	GO:GO:0004499	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114
InterPro:IPR036188	EnsemblPlants:OQU93186	ProteinID:OQU93186	ProteinID:OQU93186.1	PFAM:PF00743	PIRSF:PIRSF000332
PRINTS:PR00370	PANTHER:PTHR43539	PANTHER:PTHR43539:SF10	EnsemblPlantsGene:SORBI_3001G495850	SUPFAM:SSF51905	UniParc:UPI0003C6D158
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:76566445..76570539

Molecular Weight (calculated)

46571.9 Da

IEP (calculated)

9.767

GRAVY (calculated)

-0.044

Length

435 amino acids

Sequence
(BLAST)

001: MQGQVAGDDA GGGSSRRRES LVRGPIIVGA GPSGLAVAAT LSQHGVPFTV LERSDGIADL WTNRTYDRLR LHLPKVFCEL PHARFPADFP TYPTKHDFLR
101: YLRSYAARFG VSPLFGRTVT RARYDADASL WRVTAVSSSS SAADGGGVTT TTETEYASPW LVVASGENAE VVVPTVKGRE MFAGEVLHSS AYRSGERFKG
201: MRVLVVGCGN SGMEMCLDLC EHGAMPFMSV RSGVHVLPRE MFGASTFGIA MKLLRWLPIK LVDRLLLLIA RMVLGNTERH GLKRPKLGPL EIKNITGKSP
301: VLDVGAWSFI KSGNIKIVPE VESFTGGNGV RFVDGNKMAF DAVIFATGYR SNVPFWLKDD GDLFTEDGTA KQAAGQPSGG DWWRGPNGLY RVGFSGRGLL
401: GAGADALRAA ADIAGRWQAE VAAAGGAKIV SSSSV

Best Arabidopsis Sequence Match ( AT1G04610.1 )
(BLAST)

001: MYGNNNKKSI NITSMFQNLI PEGSDIFSRR CIWVNGPVIV GAGPSGLAVA AGLKREGVPF IILERANCIA SLWQNRTYDR LKLHLPKQFC QLPNYPFPDE
101: FPEYPTKFQF IQYLESYAAN FDINPKFNET VQSAKYDETF GLWRVKTISN MGQLGSCEFE YICRWIVVAT GENAEKVVPD FEGLEDFGGD VLHAGDYKSG
201: GRYQGKKVLV VGCGNSGMEV SLDLYNHGAN PSMVVRSAVH VLPREIFGKS TFELGVTMMK YMPVWLADKT ILFLARIILG NTDKYGLKRP KIGPLELKNK
301: EGKTPVLDIG ALPKIRSGKI KIVPGIIKFG KGKVELIDGR VLEIDSVILA TGYRSNVPSW LKDNDFFSDD GIPKNPFPNG WKGEAGLYAV GFTRKGLFGA
401: SLDAMSVAHD IANRWKEESK QQKKTAAARH RRCISHF

Arabidopsis Description

YUC3Probable indole-3-pyruvate monooxygenase YUCCA3 [Source:UniProtKB/Swiss-Prot;Acc:O23024]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.