Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G322600.1 | Wheat | nucleus | 92.4 | 93.46 |
| TraesCS5B01G316900.1 | Wheat | nucleus | 90.87 | 91.92 |
| KXG36047 | Sorghum | cytosol | 63.88 | 63.64 |
| Zm00001d006184_P001 | Maize | mitochondrion | 61.98 | 61.98 |
| Os09t0529300-01 | Rice | mitochondrion | 58.94 | 50.65 |
| GSMUA_Achr3P12470_001 | Banana | nucleus | 27.76 | 31.74 |
| GSMUA_Achr1P18680_001 | Banana | cytosol, nucleus, plastid | 30.42 | 28.47 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G316400.1 | EnsemblPlantsGene:TraesCS5A01G316400 | PANTHER:PTHR38366 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5A:+:526586533..526589493
Molecular Weight (calculated)
29615.3 Da
IEP (calculated)
5.182
GRAVY (calculated)
-0.695
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MNRQTDKVFS WLNRKMHSNA EYCTIDDNKA MEKEDSVRAR ASVAEQDTEA LLLRDVLLNG ILAIGTLGHN MNSPEARHEQ DEFIVMDEEK VDQEKYEEEK
101: CEDKEEAFAT APSAPEPAIE PARMHSSSMK EYNFTCSVKE EILMCEVEVE DISKIQEQPL LMAEKVEKVR TTLADLFAAE TFSPSDTGEK SHQKTVIIAG
201: ASTSKPTLCM EKTHKKKPIK PMPDPLKATR KLSRVVKKML GKKIHPEQLN GRSNAEEPPL LGA
101: CEDKEEAFAT APSAPEPAIE PARMHSSSMK EYNFTCSVKE EILMCEVEVE DISKIQEQPL LMAEKVEKVR TTLADLFAAE TFSPSDTGEK SHQKTVIIAG
201: ASTSKPTLCM EKTHKKKPIK PMPDPLKATR KLSRVVKKML GKKIHPEQLN GRSNAEEPPL LGA
001: MTIFNWVQKK LHQNVIKDGV RKNEKKKRNE GISEIEKNTK AILDQVGLVD ALDNWFDGVL TIGTFGFDTL NFKEEDEMDD DECGSGDLDY VVIDGSIIKN
101: VDQESDPLIS VENKFYDHHE DVGNLYVQAD TDHFGSIKTA ETPAVTAAAE AEIEPQKKRT TLAELFMEDH DKGYDTWHCK KPNNPNLDGE EVKYYKQNGS
201: KLSKRFSFVK KKLVMSKSKE EENDLRPIKK MRQMIKRMLK KKIHPDVDAT KALKKDVPYK PTRNCEALES HYLLKIQDCV A
101: VDQESDPLIS VENKFYDHHE DVGNLYVQAD TDHFGSIKTA ETPAVTAAAE AEIEPQKKRT TLAELFMEDH DKGYDTWHCK KPNNPNLDGE EVKYYKQNGS
201: KLSKRFSFVK KKLVMSKSKE EENDLRPIKK MRQMIKRMLK KKIHPDVDAT KALKKDVPYK PTRNCEALES HYLLKIQDCV A
Arabidopsis Description
unknown protein; Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT2G46640]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.