Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G316900.1 | Wheat | nucleus | 96.15 | 96.15 |
| TraesCS5A01G316400.1 | Wheat | nucleus | 93.46 | 92.4 |
| KXG36047 | Sorghum | cytosol | 66.15 | 65.15 |
| Zm00001d006184_P001 | Maize | mitochondrion | 64.23 | 63.5 |
| Os09t0529300-01 | Rice | mitochondrion | 59.62 | 50.65 |
| GSMUA_Achr3P12470_001 | Banana | nucleus | 28.08 | 31.74 |
| GSMUA_Achr1P18680_001 | Banana | cytosol, nucleus, plastid | 30.0 | 27.76 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G322600.1 | EnsemblPlantsGene:TraesCS5D01G322600 | PANTHER:PTHR38366 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5D:+:414097588..414098922
Molecular Weight (calculated)
29064.9 Da
IEP (calculated)
5.299
GRAVY (calculated)
-0.563
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MALKVFNWLN RKMHSNAEYC TIDDNKAMEK EDSVHGSVAE QDTEALLFRD VLLNGILAIG TLGHNVNSLC PEARHEQDEF IVMDEEKVDQ EKCEEEKCED
101: KEEAFATAPS APEPAIEPAK MHSSSMKEYN FTCSVKEEIL MCEVEVEDVA KVQEQPLLMV EKVEKVRTTL ADLFAAETFS PSDTGEKSHQ KTVIIAGAST
201: SKPTLCMKKT HKKKPIKPMP DPLKATRKLS RVVKKMLGKK IHPEQLNGRS NAEEPPLLGA
101: KEEAFATAPS APEPAIEPAK MHSSSMKEYN FTCSVKEEIL MCEVEVEDVA KVQEQPLLMV EKVEKVRTTL ADLFAAETFS PSDTGEKSHQ KTVIIAGAST
201: SKPTLCMKKT HKKKPIKPMP DPLKATRKLS RVVKKMLGKK IHPEQLNGRS NAEEPPLLGA
001: MTIFNWVQKK LHQNVIKDGV RKNEKKKRNE GISEIEKNTK AILDQVGLVD ALDNWFDGVL TIGTFGFDTL NFKEEDEMDD DECGSGDLDY VVIDGSIIKN
101: VDQESDPLIS VENKFYDHHE DVGNLYVQAD TDHFGSIKTA ETPAVTAAAE AEIEPQKKRT TLAELFMEDH DKGYDTWHCK KPNNPNLDGE EVKYYKQNGS
201: KLSKRFSFVK KKLVMSKSKE EENDLRPIKK MRQMIKRMLK KKIHPDVDAT KALKKDVPYK PTRNCEALES HYLLKIQDCV A
101: VDQESDPLIS VENKFYDHHE DVGNLYVQAD TDHFGSIKTA ETPAVTAAAE AEIEPQKKRT TLAELFMEDH DKGYDTWHCK KPNNPNLDGE EVKYYKQNGS
201: KLSKRFSFVK KKLVMSKSKE EENDLRPIKK MRQMIKRMLK KKIHPDVDAT KALKKDVPYK PTRNCEALES HYLLKIQDCV A
Arabidopsis Description
unknown protein; Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT2G46640]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.