Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G322600.1 | Wheat | nucleus | 96.15 | 96.15 |
| TraesCS5A01G316400.1 | Wheat | nucleus | 91.92 | 90.87 |
| KXG36047 | Sorghum | cytosol | 65.38 | 64.39 |
| Zm00001d006184_P001 | Maize | mitochondrion | 63.85 | 63.12 |
| Os09t0529300-01 | Rice | mitochondrion | 60.77 | 51.63 |
| GSMUA_Achr3P12470_001 | Banana | nucleus | 28.08 | 31.74 |
| GSMUA_Achr1P18680_001 | Banana | cytosol, nucleus, plastid | 30.77 | 28.47 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G316900.1 | EnsemblPlantsGene:TraesCS5B01G316900 | PANTHER:PTHR38366 | SEG:seg | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr5B:+:499127155..499128490
Molecular Weight (calculated)
28964.7 Da
IEP (calculated)
5.055
GRAVY (calculated)
-0.553
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MALKVFNWLN RKMHSNAEYC TIDDNKAMEK EDSVHGSVAE QDTEALLLRD VLLNGILAIG TLGHNVNSLC PEARHEQDEF IVMDEEKVDQ EKCEEEKCED
101: KEEAFATAPS APEPATEPAK MHSSSMKEYN FTCSVKEEIL MCEVEVEDVA KIQEQPLLMV EKVEKVRTTL ADLFAAEAFS PSDTGKESHQ KTVIIAGAST
201: SKPTLCMEKT HKKKPIKPMP DPLKATRKLS RAVKKMLGKK IHPEQLSGRC NAEEPPLLGA
101: KEEAFATAPS APEPATEPAK MHSSSMKEYN FTCSVKEEIL MCEVEVEDVA KIQEQPLLMV EKVEKVRTTL ADLFAAEAFS PSDTGKESHQ KTVIIAGAST
201: SKPTLCMEKT HKKKPIKPMP DPLKATRKLS RAVKKMLGKK IHPEQLSGRC NAEEPPLLGA
001: MTIFNWVQKK LHQNVIKEID GVRKNEKKKR NEGISEIEKN TKAILDQVGL VDALDNWFDG VLTIGTFGFD TLNFKEEDEM DDDECGSGDL DYVVIDGSII
101: KNVDQESDPL ISVENKFYDH HEDVGNLYVQ ADTDHFGSIK TAETPAVTAA AEAEIEPQKK RTTLAELFME DHDKGYDTWH CKKPNNPNLD GEEVKYYKQN
201: GSKLSKRFSF VKKKLVMSKS KEEENDLRPI KKMRQMIKRM LKKKIHPDVD ATKALKKDVP YKPTRNCEAL ESHYLLKIQG LYFLIILV
101: KNVDQESDPL ISVENKFYDH HEDVGNLYVQ ADTDHFGSIK TAETPAVTAA AEAEIEPQKK RTTLAELFME DHDKGYDTWH CKKPNNPNLD GEEVKYYKQN
201: GSKLSKRFSF VKKKLVMSKS KEEENDLRPI KKMRQMIKRM LKKKIHPDVD ATKALKKDVP YKPTRNCEAL ESHYLLKIQG LYFLIILV
Arabidopsis Description
unknown protein; Has 19 Blast hits to 19 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT2G46640]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.