Factsheet for TraesCS5D01G199600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	20.35	41.41
TraesCS1D01G043600.1	Wheat	mitochondrion	24.95	40.12
TraesCS6D01G055500.1	Wheat	cytosol	21.5	39.72
TraesCS7D01G294700.1	Wheat	cytosol, nucleus, peroxisome	21.5	39.44
TraesCS4D01G001800.1	Wheat	nucleus	20.73	37.89
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	20.73	37.24
TraesCS2D01G448700.1	Wheat	cytosol, nucleus, peroxisome	21.31	35.46
TraesCS6D01G167600.1	Wheat	nucleus	20.54	34.63
TraesCS6D01G258400.1	Wheat	plastid	19.77	31.31
TraesCS3D01G173400.1	Wheat	plastid	12.67	30.99
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	20.35	30.55
TraesCS7D01G228800.1	Wheat	nucleus	18.62	30.5
TraesCS5D01G252500.1	Wheat	cytosol	17.47	27.16
TraesCS3D01G496700.1	Wheat	cytosol	12.86	22.33

Protein Annotations

EnsemblPlants:TraesCS5D01G199600.1	EnsemblPlantsGene:TraesCS5D01G199600	Gene3D:3.30.1330.80	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:IPR005175	InterPro:NB-ARC	InterPro:P-loop_NTPase	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	PFAM:PF00931	PFAM:PF03479	PFscan:PS51742	SEG:seg
SUPFAM:SSF117856	SUPFAM:SSF52540	TIGR:cd11378	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5D:+:302326263..302338221

Molecular Weight (calculated)

57017.6 Da

IEP (calculated)

4.560

GRAVY (calculated)

-0.445

Length

521 amino acids

Sequence
(BLAST)

001: MSTGGPASSM TSINRRVDHD DSSGAPAAGA GGSTSGSGLS PTGRWGKPVG SMKKSRQPII TRDDPNMLKT HFLEIASGAD IVEGIARFAR RQKFGVCVLS
101: GSGMVGDVTL RQPLWPEGST VTLHGRFEIL SLSGAFMPPP CPPGANGLTI YLAGREGQVV GGKVGDALVA SGTVMVAVTT CSNITYERLP LVDDKPAKAA
201: ADPDESPAGM AVAQGLLVPK FDDLSPDLMP KEEDNLEDKQ ALKYTTEKME NDDTLEPLQG STLEQVLGNL GRKHRSQKME IDRTPDSPEP SHDSALEQTS
301: SQNMETDPSP ESAMSTLEQD ERLPLQRTLS AIQDLIKRAD WWVHKHILVN QATNDTVYCA EDLLDELDYY ELRDKIEGST LRPGCLETCD IKMKKVKGEL
401: DERMNLTDLI GMPDVRQLFI DESICQEANL FKEEKAIFGR QKELMELFDL LDFQENSPTS EQVTAAITVP DRDQARPENV SVLPIVGRSG VGKTTLAHNI
501: FREKRVGDHF DLLIWIREEV D

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.