Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- extracellular 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 98.28 | 98.28 |
| TraesCS6B01G439500.1 | Wheat | cytosol, extracellular, peroxisome | 98.28 | 97.27 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 97.93 | 97.26 |
| Os02t0820800-00 | Rice | cytosol, nucleus, peroxisome | 78.62 | 85.71 |
| Zm00001d018508_P001 | Maize | cytosol | 70.34 | 83.27 |
| OQU85972 | Sorghum | cytosol | 80.69 | 78.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.41 | 73.65 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 58.28 | 71.91 |
| GSMUA_Achr11P... | Banana | cytosol | 40.34 | 68.02 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 59.31 | 66.15 |
| KRG90376 | Soybean | nucleus | 59.31 | 64.18 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 59.31 | 63.7 |
| KRH31728 | Soybean | cytosol | 59.31 | 63.7 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 62.41 | 63.51 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 63.45 | 63.45 |
| TraesCS6D01G055500.1 | Wheat | cytosol | 60.34 | 62.06 |
| Solyc09g089620.1.1 | Tomato | nucleus | 60.69 | 61.54 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 63.45 | 60.73 |
| PGSC0003DMT400044451 | Potato | nucleus | 59.31 | 60.35 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 55.86 | 58.06 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 55.86 | 57.65 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 55.52 | 57.09 |
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 44.48 | 50.39 |
| TraesCS7D01G294700.1 | Wheat | cytosol, nucleus, peroxisome | 44.14 | 45.07 |
| TraesCS1D01G043600.1 | Wheat | mitochondrion | 49.31 | 44.14 |
| TraesCS2D01G448700.1 | Wheat | cytosol, nucleus, peroxisome | 46.9 | 43.45 |
| TraesCS6D01G167600.1 | Wheat | nucleus | 44.48 | 41.75 |
| TraesCS6D01G258400.1 | Wheat | plastid | 46.21 | 40.73 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 44.14 | 40.25 |
| TraesCS3D01G173400.1 | Wheat | plastid | 27.24 | 37.09 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 43.45 | 36.31 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 33.79 | 29.25 |
| TraesCS3D01G496700.1 | Wheat | cytosol | 28.97 | 28.0 |
| TraesCS5D01G199600.1 | Wheat | plastid | 37.24 | 20.73 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G383400.1 | EnsemblPlantsGene:TraesCS6D01G383400 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF3 | PFAM:PF03479 | PFscan:PS51742 | SEG:seg | SUPFAM:SSF117856 | TIGR:cd11378 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:+:462422769..462423641
Molecular Weight (calculated)
29443.9 Da
IEP (calculated)
6.918
GRAVY (calculated)
-0.271
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRWWDGHL GLPGVAPEQP SGSSGPKVES LALVVKDPET SPTSGGGEHA DENKEAVGGG EPRDLGAVVP APNRRPRGRP PGSKNKPKPP IFVTRDSPNA
101: LRSHVMEVAG GADVCDAIAQ FSRRRQRGVC VLSGAGTVAN VALRQPSAPG GAVVALHGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGS
201: LVAAGPVMVI ASTFANATYE RLPLEDEDEG SGPPMAHDPL MAGGIHGHGH GHGMPDPSAA MPMFNIPPNN GHLGGGGDGF PWAPHSRAPY
101: LRSHVMEVAG GADVCDAIAQ FSRRRQRGVC VLSGAGTVAN VALRQPSAPG GAVVALHGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGS
201: LVAAGPVMVI ASTFANATYE RLPLEDEDEG SGPPMAHDPL MAGGIHGHGH GHGMPDPSAA MPMFNIPPNN GHLGGGGDGF PWAPHSRAPY
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.