Factsheet for TraesCS6B01G439500.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, extracellular, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, peroxisome
Any Predictor:	cytosol, extracellular, peroxisome
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4B01G364700.1
TraesCS5A01G204900.1
TraesCS5A01G533000.1
TraesCS5A01G533100.1
TraesCS5B01G203400.2
TraesCS5D01G211200.2
TraesCSU01G139000.1
TraesCSU01G139100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	TraesCS4B01G364700.1	AT3G17860.1	21798944
AT4G14465.1	TraesCS5A01G204900.1	AT3G17860.1	21798944
AT4G14465.1	TraesCS5A01G533000.1	AT3G17860.1	21798944
AT4G14465.1	TraesCS5A01G533100.1	AT3G17860.1	21798944
AT4G14465.1	TraesCS5B01G203400.2	AT3G17860.1	21798944
AT4G14465.1	TraesCS5D01G211200.2	AT3G17860.1	21798944
AT4G14465.1	TraesCSU01G139000.1	AT3G17860.1	21798944
AT4G14465.1	TraesCSU01G139100.1	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	97.95	98.97
HORVU6Hr1G091740.1	Barley	cytosol	97.95	98.29
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	97.27	98.28
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	77.13	84.96
Zm00001d018508_P001	Maize	cytosol	68.94	82.45
OQU85972	Sorghum	cytosol	79.18	78.11
GSMUA_AchrUn_...	Banana	cytosol	41.98	73.65
GSMUA_Achr2P04080_001	Banana	cytosol	58.02	72.34
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	58.7	68.8
GSMUA_Achr11P...	Banana	cytosol	39.93	68.02
VIT_05s0049g00100.t01	Wine grape	cytosol	59.04	66.54
KRG90376	Soybean	nucleus	59.04	64.55
GSMUA_Achr5P19550_001	Banana	cytosol	59.04	64.07
KRH31728	Soybean	cytosol	59.04	64.07
KRH34516	Soybean	cytosol, nucleus, peroxisome	63.14	63.79
TraesCS6B01G072300.1	Wheat	nucleus	60.07	62.41
Solyc09g089620.1.1	Tomato	nucleus	60.75	62.24
KRG92293	Soybean	cytosol, mitochondrion, nucleus	63.14	61.06
PGSC0003DMT400044451	Potato	nucleus	58.7	60.35
CDY23160	Canola	cytosol, nucleus, vacuole	55.97	58.78
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	56.31	58.72
CDY12779	Canola	cytosol, nucleus, vacuole	55.63	57.8
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	44.37	50.78
TraesCS7B01G187300.1	Wheat	cytosol, nucleus, peroxisome	43.34	44.72
TraesCS1B01G056000.1	Wheat	mitochondrion	48.46	43.69
TraesCS2B01G470600.1	Wheat	cytosol, nucleus, peroxisome	46.42	43.45
TraesCS6B01G209300.1	Wheat	nucleus	44.37	42.07
TraesCS6B01G306100.1	Wheat	plastid	46.42	41.34
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	43.34	39.44
TraesCS7B01G297300.1	Wheat	cytosol	38.23	38.36
TraesCS3B01G198900.1	Wheat	plastid	26.96	37.62
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	33.11	28.87
TraesCS3B01G551700.1	Wheat	cytosol	28.67	28.19

Protein Annotations

EnsemblPlants:TraesCS6B01G439500.1	EnsemblPlantsGene:TraesCS6B01G439500	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF3	PFAM:PF03479	PFscan:PS51742	SEG:seg	SUPFAM:SSF117856	TIGR:cd11378
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:+:704890464..704891345

Molecular Weight (calculated)

29637.1 Da

IEP (calculated)

6.917

GRAVY (calculated)

-0.264

Length

293 amino acids

Sequence
(BLAST)

001: MANRWWDGHL GLPGVAPEQP SGSSGPKVES LALVVKDSET SPTSGGGEHA DENKDAVGGG EPRDLGAVVP APNRRPRGRP PGSKNKPKPP IFVTRDSPNA
101: LRSHVMEVAG GADVCDAIAQ FSRRRQRGVC VLSGAGTVAN VALRQPSAPG GAVVALHGRF EILSLTGTFL PGPAPPGSTG LTVYLAGGQG QVVGGSVVGS
201: LVAAGPVMVI ASTFANATYE RLPLEDEDEG SGPPMAHDPL MAGGVHVHGH GHGMPDPSAA MPMFNMPPNN GHLGGGGGGG DGFPWAPHSR APY

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.