CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH39044

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	KRH39044	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92293	Soybean	cytosol, mitochondrion, nucleus	91.72	87.79
KRH31728	Soybean	cytosol	73.45	78.89
KRG90376	Soybean	nucleus	72.07	77.99
VIT_05s0049g00100.t01	Wine grape	cytosol	68.28	76.15
GSMUA_Achr2P04080_001	Banana	cytosol	61.38	75.74
GSMUA_AchrUn_...	Banana	cytosol	42.76	74.25
GSMUA_Achr11P...	Banana	cytosol	41.38	69.77
Os08t0563200-01	Rice	cytosol	55.86	68.94
Zm00001d018508_P001	Maize	cytosol	57.59	68.16
Solyc09g089620.1.1	Tomato	nucleus	66.9	67.83
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	57.93	67.2
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	61.38	66.92
PGSC0003DMT400044451	Potato	nucleus	65.17	66.32
GSMUA_Achr5P19550_001	Banana	cytosol	61.72	66.3
CDY23160	Canola	cytosol, nucleus, vacuole	61.38	63.8
CDY12779	Canola	cytosol, nucleus, vacuole	61.72	63.48
TraesCS6A01G399200.1	Wheat	cytosol, extracellular, peroxisome	63.45	63.45
TraesCS6D01G383400.1	Wheat	cytosol, extracellular, peroxisome	63.45	63.45
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	61.38	63.35
Zm00001d031887_P001	Maize	nucleus	58.62	63.2
TraesCS6B01G439500.1	Wheat	cytosol, extracellular, peroxisome	63.79	63.14
Zm00001d049906_P001	Maize	nucleus	57.59	63.02
HORVU6Hr1G091740.1	Barley	cytosol	63.45	63.01
KXG25365	Sorghum	nucleus	58.62	62.96
KRG92616	Soybean	nucleus	59.66	62.45
KRH34163	Soybean	nucleus	59.66	61.79
TraesCS4D01G001800.1	Wheat	nucleus	60.34	61.4
TraesCS4A01G312400.1	Wheat	nucleus	60.0	61.05
TraesCS6B01G072300.1	Wheat	nucleus	58.62	60.28
OQU85972	Sorghum	cytosol	61.72	60.27
HORVU4Hr1G000870.2	Barley	nucleus	59.31	59.93
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	57.93	59.79
TraesCS6A01G053800.1	Wheat	nucleus	57.59	59.22
TraesCS6D01G055500.1	Wheat	cytosol	57.59	59.22
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	37.24	57.14
KRH73062	Soybean	cytosol	43.79	55.46
KRH77205	Soybean	nucleus	46.21	53.6
KRH15076	Soybean	nucleus	32.07	53.45
KRH28289	Soybean	cytosol	45.86	53.2
KRH31005	Soybean	nucleus	52.76	52.94
KRH00993	Soybean	nucleus	48.62	52.61
KRH51551	Soybean	plastid	36.9	52.45
KRH40225	Soybean	nucleus	48.62	52.22
KRH76289	Soybean	nucleus	49.31	49.65
KRH57320	Soybean	nucleus	48.28	49.47
KRG97871	Soybean	nucleus	51.38	49.34
KRH58197	Soybean	cytosol	46.21	48.55
KRH04051	Soybean	nucleus	47.93	48.43
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	41.38	48.19
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	40.0	46.77
KRH65251	Soybean	nucleus	50.0	46.77
KRH04340	Soybean	cytosol	40.34	46.61
KRH28008	Soybean	nucleus	46.9	45.64
KRH77431	Soybean	nucleus	46.9	45.33
HORVU0Hr1G011700.1	Barley	cytosol	28.28	37.96
KRH62181	Soybean	nucleus	36.21	37.5
KRH16838	Soybean	nucleus	33.1	37.5
KRH72453	Soybean	nucleus	34.83	37.27
KRH52892	Soybean	nucleus	36.21	36.97

Protein Annotations

EntrezGene:100798994	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02006607	EnsemblPlantsGene:GLYMA_10G188400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	UniProt:I1LCD4	InterPro:IPR005175	EnsemblPlants:KRH34516
ProteinID:KRH34516	ProteinID:KRH34516.1	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF42	SUPFAM:SSF117856	UniParc:UPI000294806C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:42143305..42144254

Molecular Weight (calculated)

29513.6 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.349

Length

290 amino acids

Sequence
(BLAST)

001: MATLANPWWT GQGGLSGVDH PGTHSPGLSK RHSDLGINEN SDSHNNREEF DEDNRDEPKE GAVEVGTRRP RGRPPGSKNK PKPPIFVTRD SPNALRSHVM
101: EITGGADVAE SVAQFARRRQ RGVCVLSGSG SVANVTLRQP SAPGAVVALH GRFEILSLTG TFLPGPAPPG STGLTVYLAG GQGQVVGGSV VGSLVAAGPV
201: MVIAATFANA TYERLPLDED DEGPSSMVGA QGGGGSPPLP LGIGSSGGGQ LQGGIPDPSS LPLYNLPPNG GGGGQVGHEA LAWAHGRAPF

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.