Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU4Hr1G087520.3 | |
| HORVU5Hr1G060730.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14465.1 | HORVU4Hr1G087520.3 | AT3G17860.1 | 21798944 |
| AT4G14465.1 | HORVU5Hr1G060730.3 | AT3G17860.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G001100.1 | Wheat | cytosol, nucleus, peroxisome | 83.97 | 96.4 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 95.47 | 96.14 |
| TraesCS4D01G001800.1 | Wheat | nucleus | 93.03 | 93.68 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 90.94 | 92.88 |
| Os08t0563200-01 | Rice | cytosol | 62.37 | 76.17 |
| Zm00001d031887_P001 | Maize | nucleus | 68.99 | 73.61 |
| KXG25365 | Sorghum | nucleus | 68.99 | 73.33 |
| GSMUA_AchrUn_... | Banana | cytosol | 42.16 | 72.46 |
| Zm00001d049906_P001 | Maize | nucleus | 66.55 | 72.08 |
| GSMUA_Achr2P04080_001 | Banana | cytosol | 56.79 | 69.36 |
| GSMUA_Achr11P... | Banana | cytosol | 40.77 | 68.02 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 57.14 | 63.08 |
| KRG90376 | Soybean | nucleus | 58.54 | 62.69 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 47.04 | 62.5 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 63.41 | 62.33 |
| Os07t0235200-01 | Rice | endoplasmic reticulum, extracellular | 40.77 | 61.9 |
| GSMUA_Achr5P19550_001 | Banana | cytosol | 57.84 | 61.48 |
| KRH31728 | Soybean | cytosol | 57.49 | 61.11 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 58.19 | 59.43 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 59.93 | 59.31 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 56.79 | 58.42 |
| Solyc09g089620.1.1 | Tomato | nucleus | 58.19 | 58.39 |
| PGSC0003DMT400044451 | Potato | nucleus | 57.84 | 58.25 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 56.79 | 57.8 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 59.23 | 56.11 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 47.39 | 53.12 |
| HORVU7Hr1G020390.1 | Barley | mitochondrion | 33.45 | 50.79 |
| HORVU1Hr1G008650.1 | Barley | mitochondrion, nucleus, peroxisome | 51.22 | 45.65 |
| HORVU4Hr1G015750.1 | Barley | mitochondrion | 43.21 | 44.6 |
| HORVU7Hr1G070490.2 | Barley | cytosol, mitochondrion, peroxisome | 43.9 | 43.75 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 46.69 | 43.37 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 46.69 | 43.37 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 43.9 | 39.87 |
| HORVU6Hr1G070090.1 | Barley | plastid | 45.3 | 39.27 |
| HORVU3Hr1G033710.2 | Barley | plastid | 28.57 | 38.5 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 44.25 | 36.39 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 37.98 | 35.97 |
| HORVU3Hr1G108820.1 | Barley | mitochondrion | 24.74 | 27.73 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EMBL:AK371653 | InterPro:AT-hook_nuclear | UniProt:F2E679 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU4Hr1G000870 | EnsemblPlants:HORVU4Hr1G000870.2 |
| InterPro:IPR005175 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF3 | SUPFAM:SSF117856 | UniParc:UPI0002007FCD | SEG:seg | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F2E679]
Coordinates
chrchr4H:-:1309555..1311258
Molecular Weight (calculated)
29416.7 Da
IEP (calculated)
6.635
GRAVY (calculated)
-0.339
Length
287 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRWWDEGR LAEAPSASGL ASNSNQNQQQ LEDAMAMAAP KLDGESSHSG GGSGQEQDDE PKEGAVVVPP NRRPRGRPPG SKNKPKPPIF VTRDSPNALR
101: SHVMEVAGGA DVAESIAHFS RRRQRGVCVL SGAGTVADVA LRQPAAPGAV VALRGRFEIL SLTGTFLPGP SPPGSTGLTV YLAGGQGQVV GGSVVGALTA
201: AGPVMVIAST FANATYERLP LDDAEEDHQL EAARRHGAPG SGVALPPMMA GDPSAPGMPM YGVPPNLMPG GGGHAAPEWA AHARPPY
101: SHVMEVAGGA DVAESIAHFS RRRQRGVCVL SGAGTVADVA LRQPAAPGAV VALRGRFEIL SLTGTFLPGP SPPGSTGLTV YLAGGQGQVV GGSVVGALTA
201: AGPVMVIAST FANATYERLP LDDAEEDHQL EAARRHGAPG SGVALPPMMA GDPSAPGMPM YGVPPNLMPG GGGHAAPEWA AHARPPY
001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y
Arabidopsis Description
AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.