Factsheet for Zm00001d049906_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005726_P001
Zm00001d020409_P002
Zm00001d032009_P001
Zm00001d050365_P006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14465.1	Zm00001d005726_P001	AT3G17860.1	21798944
AT4G14465.1	Zm00001d020409_P002	AT3G17860.1	21798944
AT4G14465.1	Zm00001d032009_P001	AT3G17860.1	21798944
AT4G14465.1	Zm00001d050365_P006	AT3G17860.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25365	Sorghum	nucleus	95.85	94.07
Zm00001d031887_P001	Maize	nucleus	90.57	89.22
Os08t0563200-01	Rice	cytosol	71.32	80.43
GSMUA_AchrUn_...	Banana	cytosol	47.55	75.45
TraesCS4B01G001100.1	Wheat	cytosol, nucleus, peroxisome	70.57	74.8
GSMUA_Achr2P04080_001	Banana	cytosol	61.51	69.36
Zm00001d018508_P001	Maize	cytosol	63.77	68.98
TraesCS4A01G312400.1	Wheat	nucleus	72.08	67.02
HORVU6Hr1G010470.2	Barley	cytosol, nucleus, peroxisome	70.94	66.9
HORVU4Hr1G000870.2	Barley	nucleus	72.08	66.55
TraesCS4D01G001800.1	Wheat	nucleus	71.32	66.32
GSMUA_Achr11P...	Banana	cytosol	43.02	66.28
TraesCS6A01G053800.1	Wheat	nucleus	70.19	65.96
TraesCS6B01G072300.1	Wheat	nucleus	70.19	65.96
TraesCS6D01G055500.1	Wheat	cytosol	69.43	65.25
KRG90376	Soybean	nucleus	63.02	62.31
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	44.15	61.9
KRH31728	Soybean	cytosol	63.02	61.85
VIT_05s0049g00100.t01	Wine grape	cytosol	60.38	61.54
GSMUA_Achr5P19550_001	Banana	cytosol	60.38	59.26
KRH34516	Soybean	cytosol, nucleus, peroxisome	63.02	57.59
Solyc09g089620.1.1	Tomato	nucleus	61.51	56.99
PGSC0003DMT400044451	Potato	nucleus	60.75	56.49
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	59.62	56.23
CDY23160	Canola	cytosol, nucleus, vacuole	58.87	55.91
CDY12779	Canola	cytosol, nucleus, vacuole	58.87	55.32
KRG92293	Soybean	cytosol, mitochondrion, nucleus	62.64	54.79
Zm00001d028577_P001	Maize	nucleus	49.81	48.35
Zm00001d039249_P001	Maize	cytosol	26.04	44.52
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	48.68	44.33
Zm00001d016132_P001	Maize	nucleus	51.32	44.01
HORVU0Hr1G011700.1	Barley	cytosol	35.85	43.98
Zm00001d053429_P001	Maize	nucleus	52.45	43.44
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	50.57	43.37
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	50.19	42.9
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	43.77	42.8
Zm00001d051620_P001	Maize	plastid	50.19	41.96
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	47.17	41.81
Zm00001d017825_P001	Maize	plastid	50.19	41.05
Zm00001d009031_P001	Maize	mitochondrion, plastid	31.32	40.89
Zm00001d036088_P001	Maize	extracellular	42.64	40.36
Zm00001d045928_P001	Maize	nucleus	45.66	39.54
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	48.3	37.54
Zm00001d042060_P001	Maize	plastid	30.57	33.06
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	36.6	32.99
Zm00001d020768_P001	Maize	cytosol	36.98	29.43
Zm00001d005923_P001	Maize	nucleus	36.98	28.49

Protein Annotations

EMBL:EU969981	EnsemblPlants:Zm00001d049906_P001	EnsemblPlants:Zm00001d049906_T001	EnsemblPlantsGene:Zm00001d049906	EntrezGene:100284873	Gene3D:3.30.1330.80
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:IPR005175	InterPro:PPC_dom
PANTHER:PTHR31100	PANTHER:PTHR31100:SF3	PFAM:PF03479	PFscan:PS51742	ProteinID:AQK51559.1	SEG:seg
SUPFAM:SSF117856	UniParc:UPI000182ED5F	UniProt:B6TYB6	MapMan:35.1	:	:

Description

DNA-binding protein

Coordinates

chr4:+:51886440..51887237

Molecular Weight (calculated)

26408.5 Da

IEP (calculated)

8.491

GRAVY (calculated)

-0.183

Length

265 amino acids

Sequence
(BLAST)

001: MAPSSKDGAT EQPTSGGSGD DRENGTGEPK EGAVVTGNRR PRGRPPGSKN KPKPPIFVTR DSPNALRSHV MEVAGGADVA ESIAHFARRR QRGVCVLSGA
101: GTVTDVALRQ PTAPGAVVAL RGRFEILSIT GTFLPGPAPP GSTGLTVYLA GGQGQVVGGS VVGTLIAAGP VMVMASTFAN ATYERLPLDD AEEDPGQAQL
201: PPGPGGGPPL IMGGIADPSA MPMFGGGGGG VPPSLMMPGG AAASGAGLQL GHEGLAWARA RPPPY

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.