Factsheet for Zm00001d028577_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95114	Sorghum	nucleus	92.67	93.01
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	82.42	87.89
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	82.05	87.5
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	81.69	87.11
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	81.69	87.11
Os03t0270000-01	Rice	nucleus	81.32	86.05
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	52.01	54.2
Zm00001d018508_P001	Maize	cytosol	47.25	52.65
KRH73062	Soybean	cytosol	43.96	52.4
KRH15076	Soybean	nucleus	33.33	52.3
Zm00001d031887_P001	Maize	nucleus	50.55	51.3
Zm00001d049906_P001	Maize	nucleus	48.35	49.81
GSMUA_Achr11P...	Banana	nucleus	53.48	49.66
GSMUA_Achr7P10630_001	Banana	plastid	52.75	49.48
KRH31005	Soybean	nucleus	52.38	49.48
GSMUA_Achr6P01060_001	Banana	nucleus	48.72	47.5
KRG97871	Soybean	nucleus	52.01	47.02
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	48.72	46.34
GSMUA_Achr9P28280_001	Banana	plastid	49.82	45.33
GSMUA_Achr7P15000_001	Banana	nucleus	44.69	43.73
AT3G55560.1	Thale cress	plastid	49.45	43.55
CDY60321	Canola	plastid	46.89	43.24
CDY68242	Canola	plastid	46.89	43.1
Bra007176.1-P	Field mustard	plastid	46.52	42.76
CDX76085	Canola	plastid	47.99	42.67
Bra014735.1-P	Field mustard	plastid	47.99	42.67
CDY53687	Canola	nucleus	46.52	42.62
Bra003217.1-P	Field mustard	nucleus	46.52	42.62
CDY41211	Canola	plastid	45.79	42.37
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	48.72	42.36
CDY02949	Canola	plastid	47.62	42.35
VIT_13s0019g02080.t01	Wine grape	nucleus	50.55	42.2
Solyc05g053000.1.1	Tomato	nucleus	47.62	41.53
Zm00001d039249_P001	Maize	cytosol	23.08	40.65
Zm00001d024537_P001	Maize	cytosol, endoplasmic reticulum, nucleus	41.39	38.83
Zm00001d016132_P001	Maize	nucleus	43.59	38.51
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	43.59	38.51
Zm00001d051620_P001	Maize	plastid	44.32	38.17
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	43.22	38.06
Zm00001d017825_P001	Maize	plastid	45.05	37.96
Zm00001d045928_P001	Maize	nucleus	41.76	37.25
Zm00001d049521_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	40.66	37.12
Zm00001d009031_P001	Maize	mitochondrion, plastid	27.47	36.95
Zm00001d053429_P001	Maize	nucleus	43.22	36.88
Zm00001d042060_P001	Maize	plastid	32.97	36.73
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	36.26	36.53
Zm00001d036088_P001	Maize	extracellular	36.26	35.36
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	43.96	35.19
Zm00001d020768_P001	Maize	cytosol	37.73	30.93
Zm00001d005923_P001	Maize	nucleus	37.73	29.94
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	31.87	29.59

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A0A1D6JXR4	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045824	InterPro:IPR005175
ProteinID:ONL96467.1	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF40	SUPFAM:SSF117856	UniParc:UPI000221BE21	EnsemblPlantsGene:Zm00001d028577	EnsemblPlants:Zm00001d028577_P001	EnsemblPlants:Zm00001d028577_T001
SEG:seg	:	:	:	:	:

Description

DNA-binding protein

Coordinates

chr1:+:39677011..39677832

Molecular Weight (calculated)

27624.3 Da

IEP (calculated)

7.097

GRAVY (calculated)

-0.342

Length

273 amino acids

Sequence
(BLAST)

001: MGSLDGGHSL QQGRHHGYAH SHSHVGAGPD SSNNNNDEDD ASPPPPAGAG GGPRRPRGRP PGSKNKPKPP VVVTRESPNA MRSHVLEIAS GADIVDAIAG
101: FSRRRQRGVS VLSGTGAVTN VTLREPAGAG GAAAVALRGR FEILSMSGAF LPAPAPPGAT GLTVYLAGGQ GQVVGGSVMG ELIASGPVMV IAATFGNATY
201: ERLPLDQADA EEGAVLSGSS EGATAQQLEQ QQSSGGPVVP PSMYAVPQTP PHPHDMFGQW GHAAVTRPPP TSF

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.