Factsheet for Solyc05g053000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	88.5	88.22
KRH15076	Soybean	nucleus	31.95	57.47
KRH73062	Soybean	cytosol	41.21	56.33
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	46.01	54.96
Os03t0270000-01	Rice	nucleus	43.45	52.71
KRH31005	Soybean	nucleus	48.56	52.6
KRG97871	Soybean	nucleus	50.16	51.99
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	42.49	51.95
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	42.49	51.95
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	42.49	51.95
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	42.17	51.56
GSMUA_Achr6P01060_001	Banana	nucleus	45.69	51.07
Solyc06g060500.1.1	Tomato	nucleus	35.46	50.45
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	45.69	49.83
GSMUA_Achr9P28280_001	Banana	plastid	46.96	49.0
EER95114	Sorghum	nucleus	42.49	48.9
GSMUA_Achr11P...	Banana	nucleus	45.69	48.64
Solyc01g080960.2.1	Tomato	nucleus	40.89	48.3
Solyc09g089620.1.1	Tomato	nucleus	44.09	48.25
Zm00001d028577_P001	Maize	nucleus	41.53	47.62
Solyc11g006090.1.1	Tomato	nucleus	38.66	47.45
VIT_13s0019g02080.t01	Wine grape	nucleus	49.52	47.4
CDY41211	Canola	plastid	44.41	47.12
CDY53687	Canola	nucleus	44.73	46.98
Bra003217.1-P	Field mustard	nucleus	44.73	46.98
CDY60321	Canola	plastid	44.41	46.96
CDY68242	Canola	plastid	44.41	46.8
Bra007176.1-P	Field mustard	plastid	44.09	46.46
AT3G55560.1	Thale cress	plastid	45.69	46.13
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	36.1	46.12
GSMUA_Achr7P10630_001	Banana	plastid	42.49	45.7
CDX76085	Canola	plastid	44.73	45.6
Bra014735.1-P	Field mustard	plastid	44.73	45.6
CDY02949	Canola	plastid	44.41	45.28
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	34.82	43.43
Solyc08g077010.1.1	Tomato	cytosol	39.94	43.4
GSMUA_Achr7P15000_001	Banana	nucleus	37.7	42.29
Solyc01g091470.2.1	Tomato	nucleus	39.94	41.39
Solyc08g079720.2.1	Tomato	nucleus	38.34	41.1
Solyc08g007560.1.1	Tomato	nucleus	37.7	36.99
Solyc12g087950.1.1	Tomato	nucleus	25.88	30.45
Solyc04g076220.2.1	Tomato	nucleus	29.39	27.38

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4C1Y0	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc05g053000.1
EnsemblPlants:Solyc05g053000.1.1	UniParc:UPI00027660E9	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4C1Y0]

Coordinates

chr5:+:63166765..63167706

Molecular Weight (calculated)

33097.7 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.370

Length

313 amino acids

Sequence
(BLAST)

001: MANRWWAGNL SMNPKVEDKS NQLRSDKEQE FMNTTAAAAA TATTNSSENP NEMSHEGEEN IQSPEGLFSS GPSSSTHRAG RRPRGRPMGS KNKPKPPIVV
101: TKETPNSLKS HVFEIKSESD IIETIAAFAN RRGCGVSVLS GSGIVTNVTL RQPAAVTAAG AGGVITLHGR FEILSLSGAF LPAPNAPVGA TGLTVYLAGS
201: QGQVVGGNVV GELIASGPVI VIAASFTNAT FERLPIVEND EEEVENNVNE GMQMDIPTTS GAGNVNSDNL QVDHPSPSTS IPMYNLATNV LPNDQMHHEL
301: FWTPPPSRPS PYS

Best Arabidopsis Sequence Match ( AT3G55560.1 )
(BLAST)

001: MANPWWVGNV AIGGVESPVT SSAPSLHHRN SNNNNPPTMT RSDPRLDHDF TTNNSGSPNT QTQSQEEQNS RDEQPAVEPG SGSGSTGRRP RGRPPGSKNK
101: PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA
201: GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG
301: GPPPRAPPSY

Arabidopsis Description

AHL15AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VH84]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.