CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007176.1-P	Field mustard	plastid	97.97	97.31
CDY68242	Canola	plastid	97.97	97.31
CDY53687	Canola	nucleus	88.47	87.58
CDY60321	Canola	plastid	87.12	86.82
AT3G55560.1	Thale cress	plastid	87.12	82.9
CDY02949	Canola	plastid	85.42	82.08
CDX76085	Canola	plastid	85.08	81.76
KRH15076	Soybean	nucleus	32.54	55.17
KRH73062	Soybean	cytosol	42.37	54.59
KRH31005	Soybean	nucleus	50.51	51.56
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	43.73	50.39
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	44.75	50.38
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	43.39	50.0
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	43.39	50.0
KRG97871	Soybean	nucleus	50.85	49.67
Os03t0270000-01	Rice	nucleus	43.39	49.61
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	43.05	49.61
CDY23160	Canola	cytosol, nucleus, vacuole	45.42	48.03
VIT_13s0019g02080.t01	Wine grape	nucleus	52.88	47.71
GSMUA_Achr11P...	Banana	nucleus	47.12	47.28
CDY12779	Canola	cytosol, nucleus, vacuole	45.08	47.16
EER95114	Sorghum	nucleus	42.71	46.32
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	48.81	45.86
Zm00001d028577_P001	Maize	nucleus	42.37	45.79
GSMUA_Achr7P10630_001	Banana	plastid	45.08	45.7
Solyc05g053000.1.1	Tomato	nucleus	47.12	44.41
CDX87591	Canola	nucleus	40.34	42.5
GSMUA_Achr7P15000_001	Banana	nucleus	40.0	42.29
CDY70947	Canola	plastid	37.29	42.15
CDY14862	Canola	plastid	37.29	42.15
CDY53650	Canola	plastid	36.95	41.92
CDX79838	Canola	plastid	36.95	41.92
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	40.68	41.81
GSMUA_Achr6P01060_001	Banana	nucleus	39.66	41.79
CDY20404	Canola	nucleus	38.31	41.7
CDX90445	Canola	plastid	38.64	41.61
CDY37040	Canola	nucleus	43.39	41.56
CDY45266	Canola	plastid	28.81	41.46
CDY18931	Canola	nucleus	43.39	41.42
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	40.34	41.32
CDX74739	Canola	nucleus	43.39	41.29
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	43.73	41.08
GSMUA_Achr9P28280_001	Banana	plastid	41.69	41.0
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	38.31	40.94
CDY64701	Canola	nucleus	43.05	40.84
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	40.0	40.83
CDY27387	Canola	nucleus	43.05	40.71
CDY45983	Canola	nucleus	39.66	40.62
CDY21451	Canola	cytosol	33.56	40.41
CDX83182	Canola	cytosol	33.22	40.0
CDX78802	Canola	cytosol	39.32	39.86
CDX79599	Canola	cytosol, peroxisome, plastid	36.61	39.56
CDY54780	Canola	cytosol	38.64	39.04
CDX68095	Canola	cytosol	35.59	38.89
CDX96613	Canola	nucleus	39.66	38.87
CDY72485	Canola	nucleus	35.93	38.83
CDX85952	Canola	cytosol	34.58	37.5
CDY59041	Canola	cytosol, nucleus, peroxisome	36.27	37.41
CDY33658	Canola	nucleus	36.95	37.33
CDY41289	Canola	nucleus	39.32	36.83
CDX82978	Canola	cytosol, nucleus, plastid	39.32	36.83
CDY31511	Canola	nucleus	33.56	36.8
CDX75499	Canola	cytosol, nucleus, peroxisome	37.29	36.42
CDX69136	Canola	cytosol, nucleus, peroxisome	36.95	36.09
CDY01347	Canola	nucleus	33.22	36.03
CDX98771	Canola	nucleus	38.64	35.96
CDY31858	Canola	nucleus	32.88	35.53
CDY29494	Canola	nucleus	32.88	35.4
CDX94128	Canola	nucleus	38.64	34.86
CDY04391	Canola	nucleus	38.64	34.86
CDY31677	Canola	cytosol	22.71	34.01
CDX84222	Canola	cytosol	22.03	33.85
CDY65376	Canola	nucleus	29.49	31.64

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A0A078HU36	InterPro:AT-hook_nuclear	EnsemblPlants:CDY41211	ProteinID:CDY41211
ProteinID:CDY41211.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00072625001	InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	SUPFAM:SSF117856	UniParc:UPI0004EE2DF5	SEG:seg	:

Description

BnaC08g26470DAT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A078HU36]

Coordinates

chrLK032493:+:103024..104586

Molecular Weight (calculated)

30804.7 Da

IEP (calculated)

5.324

GRAVY (calculated)

-0.526

Length

295 amino acids

Sequence
(BLAST)

001: MANPWWVESP VTSSAPSLHH RSNNPTMTLS DPRLDHDFAN NSGSPKTQNS QEEQTSRDEL PAVEPGSGSG STGRRPRGRP PGSKNKPKNP VVVTKESPNS
101: LQSHVLEIAA GADVAESLNA FARRRGRGVS VLSGSGLVTN VTLRQPSASG GVVSLHGQFE ILSMCGAFLP TSGSPAAAAG LTIYLAGAQG QVVGGGVAGP
201: LIASGPVIVI AATFCNATFE RLPIEDEQQG EQQQPQVEEA KKETDDNESG NDGNDGSMQA QQIYSMGTSF VPNGHQMGQQ DVFWGAPPPR GPPSY

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.