CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85952	Canola	cytosol	95.93	95.22
Bra003717.1-P	Field mustard	nucleus	99.63	93.73
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	82.59	80.8
CDX87591	Canola	nucleus	80.37	77.5
CDY20404	Canola	nucleus	74.44	74.17
CDY45983	Canola	nucleus	78.89	73.96
AT1G76500.1	Thale cress	nucleus	81.48	72.85
CDX96613	Canola	nucleus	70.0	62.79
CDY33658	Canola	nucleus	67.04	61.99
CDY31511	Canola	nucleus	60.74	60.97
CDY31858	Canola	nucleus	61.48	60.81
CDY01347	Canola	nucleus	61.11	60.66
CDY29494	Canola	nucleus	61.48	60.58
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	47.78	52.65
KRH51551	Soybean	plastid	39.63	52.45
PGSC0003DMT400025705	Potato	plastid	48.52	50.38
CDX90445	Canola	plastid	42.96	42.34
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	50.74	41.77
TraesCS6B01G306100.1	Wheat	plastid	50.74	41.64
TraesCS6D01G258400.1	Wheat	plastid	50.74	41.64
Zm00001d051620_P001	Maize	plastid	48.89	41.64
TraesCS6A01G277700.1	Wheat	plastid	50.37	41.59
HORVU6Hr1G070090.1	Barley	plastid	50.74	41.39
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	51.48	41.37
Zm00001d017825_P001	Maize	plastid	49.63	41.36
GSMUA_Achr9P12320_001	Banana	plastid	42.96	41.28
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	47.78	40.82
CDX69136	Canola	cytosol, nucleus, peroxisome	44.81	40.07
CDX75499	Canola	cytosol, nucleus, peroxisome	44.81	40.07
CDX79838	Canola	plastid	38.15	39.62
CDY53650	Canola	plastid	38.15	39.62
CDY54780	Canola	cytosol	42.22	39.04
KXG19929	Sorghum	nucleus	45.93	38.99
Zm00001d045928_P001	Maize	nucleus	44.07	38.89
CDX79599	Canola	cytosol, peroxisome, plastid	39.26	38.83
CDX78802	Canola	cytosol	41.48	38.49
CDY72485	Canola	nucleus	38.89	38.46
CDY59041	Canola	cytosol, nucleus, peroxisome	40.37	38.11
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	37.41	37.27
CDY70947	Canola	plastid	35.56	36.78
CDY23160	Canola	cytosol, nucleus, vacuole	37.78	36.56
CDY12779	Canola	cytosol, nucleus, vacuole	38.15	36.52
CDY14862	Canola	plastid	35.19	36.4
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	42.59	36.39
CDY68242	Canola	plastid	40.0	36.36
Os06t0326900-01	Rice	nucleus	43.33	36.34
EER88668	Sorghum	cytosol	36.3	36.3
CDY60321	Canola	plastid	39.63	36.15
CDY18931	Canola	nucleus	41.11	35.92
TraesCS7A01G225700.1	Wheat	nucleus	42.96	35.91
CDY53687	Canola	nucleus	39.63	35.91
TraesCS7D01G228800.1	Wheat	nucleus	42.22	35.85
CDX74739	Canola	nucleus	41.11	35.81
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	42.59	35.71
CDY41211	Canola	plastid	38.89	35.59
CDY37040	Canola	nucleus	40.37	35.39
CDY64701	Canola	nucleus	40.74	35.37
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	40.74	35.03
CDY27387	Canola	nucleus	40.37	34.94
CDX84222	Canola	cytosol	24.81	34.9
CDY02949	Canola	plastid	38.89	34.2
TraesCS7B01G297300.1	Wheat	cytosol	36.3	33.56
CDX76085	Canola	plastid	38.15	33.55
CDY31677	Canola	cytosol	24.44	33.5
TraesCS7A01G395400.1	Wheat	cytosol	35.56	33.22
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	34.81	32.64
CDX98771	Canola	nucleus	38.15	32.49
CDY45266	Canola	plastid	24.44	32.2
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	34.44	32.18
CDX82978	Canola	cytosol, nucleus, plastid	37.41	32.06
CDY41289	Canola	nucleus	37.41	32.06
CDX94128	Canola	nucleus	38.52	31.8
CDY21451	Canola	cytosol	28.15	31.02
HORVU7Hr1G093230.2	Barley	cytosol	34.44	30.69
CDX83182	Canola	cytosol	27.78	30.61
CDY04391	Canola	nucleus	35.93	29.66
CDY65376	Canola	nucleus	25.56	25.09

Protein Annotations

EnsemblPlants:CDX68095	EnsemblPlantsGene:GSBRNA2T00099336001	InterPro:AT-hook_nuclear	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF43	PFAM:PF03479	PFscan:PS51742	PIRSF:PIRSF016021	ProteinID:CDX68095	ProteinID:CDX68095.1
SEG:seg	SUPFAM:SSF117856	UniParc:UPI0004EF4BA3	MapMan:35.1	:	:

Description

BnaA07g21350D

Coordinates

chrLK031787:-:3846938..3847801

Molecular Weight (calculated)

28044.6 Da

IEP (calculated)

6.685

GRAVY (calculated)

-0.621

Length

270 amino acids

Sequence
(BLAST)

001: MDGGYDQSGH SRYFHNLFRP ELQHQLQPQP QPQPQPQPQP QPQSDDESDS NNKYPGQPDS DQVTSGSTSG KRPRGRPPGS KNKPKPPVIV TRDSPNVLRS
101: HVLEVSSGAD IIESVNNYAR RRGRGPVTTH GNNGGTEAGA GGVVTLRGRF EILSITGTVL PPPAPPGCGG LSIFVAGEQG RVIGGRVVAP LVASGPVILM
201: AASFSNATFE RLPLEEEGGE GGGDVGGGVP PPATSETAPS GVAQGELRVN MSGYDQFSGW GAGAASRPSF

Best Arabidopsis Sequence Match ( AT1G20900.1 )
(BLAST)

001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F

Arabidopsis Description

AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.