Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68095 | Canola | cytosol | 95.22 | 95.93 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 81.99 | 80.8 |
| CDX87591 | Canola | nucleus | 79.41 | 77.14 |
| CDY20404 | Canola | nucleus | 73.9 | 74.17 |
| CDY45983 | Canola | nucleus | 77.94 | 73.61 |
| AT1G76500.1 | Thale cress | nucleus | 80.15 | 72.19 |
| CDX96613 | Canola | nucleus | 68.01 | 61.46 |
| CDY33658 | Canola | nucleus | 65.44 | 60.96 |
| CDY31511 | Canola | nucleus | 59.56 | 60.22 |
| CDY31858 | Canola | nucleus | 60.29 | 60.07 |
| CDY01347 | Canola | nucleus | 59.93 | 59.93 |
| CDY29494 | Canola | nucleus | 60.29 | 59.85 |
| Solyc04g082810.2.1 | Tomato | cytosol, nucleus, peroxisome | 47.06 | 52.24 |
| KRH51551 | Soybean | plastid | 38.6 | 51.47 |
| PGSC0003DMT400025705 | Potato | plastid | 47.43 | 49.62 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 47.79 | 41.14 |
| CDX90445 | Canola | plastid | 41.18 | 40.88 |
| EES05630 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 49.26 | 40.85 |
| Zm00001d017825_P001 | Maize | plastid | 48.53 | 40.74 |
| TraesCS6D01G258400.1 | Wheat | plastid | 49.26 | 40.73 |
| TraesCS6B01G306100.1 | Wheat | plastid | 49.26 | 40.73 |
| Zm00001d051620_P001 | Maize | plastid | 47.43 | 40.69 |
| TraesCS6A01G277700.1 | Wheat | plastid | 48.9 | 40.67 |
| HORVU6Hr1G070090.1 | Barley | plastid | 49.26 | 40.48 |
| Os02t0713700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 50.0 | 40.48 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 44.12 | 39.74 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 44.12 | 39.74 |
| CDX79838 | Canola | plastid | 37.87 | 39.62 |
| CDY53650 | Canola | plastid | 37.87 | 39.62 |
| GSMUA_Achr9P12320_001 | Banana | plastid | 40.81 | 39.5 |
| KXG19929 | Sorghum | nucleus | 44.49 | 38.05 |
| CDY54780 | Canola | cytosol | 40.81 | 38.01 |
| Zm00001d045928_P001 | Maize | nucleus | 42.28 | 37.58 |
| CDX78802 | Canola | cytosol | 40.07 | 37.46 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 37.5 | 37.36 |
| CDY72485 | Canola | nucleus | 37.13 | 37.0 |
| CDY70947 | Canola | plastid | 35.29 | 36.78 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 38.6 | 36.71 |
| CDY14862 | Canola | plastid | 34.93 | 36.4 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 36.76 | 35.84 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 37.13 | 35.82 |
| Zm00001d046696_P001 | Maize | cytosol, nucleus, peroxisome | 35.66 | 35.79 |
| Os06t0326900-01 | Rice | nucleus | 42.28 | 35.71 |
| EER88668 | Sorghum | cytosol | 35.29 | 35.56 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 41.18 | 35.44 |
| CDY18931 | Canola | nucleus | 40.07 | 35.28 |
| CDX74739 | Canola | nucleus | 40.07 | 35.16 |
| TraesCS7B01G193900.1 | Wheat | cytosol, nucleus, peroxisome | 41.54 | 35.09 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 41.54 | 34.98 |
| TraesCS7D01G228800.1 | Wheat | nucleus | 40.81 | 34.91 |
| CDY37040 | Canola | nucleus | 39.34 | 34.74 |
| CDY64701 | Canola | nucleus | 39.71 | 34.73 |
| CDY68242 | Canola | plastid | 37.87 | 34.68 |
| CDY41211 | Canola | plastid | 37.5 | 34.58 |
| CDY60321 | Canola | plastid | 37.5 | 34.46 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 39.71 | 34.39 |
| CDY27387 | Canola | nucleus | 39.34 | 34.29 |
| CDY53687 | Canola | nucleus | 37.5 | 34.23 |
| TraesCS7B01G297300.1 | Wheat | cytosol | 35.29 | 32.88 |
| CDX84222 | Canola | cytosol | 23.16 | 32.81 |
| CDY02949 | Canola | plastid | 36.76 | 32.57 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 34.56 | 32.53 |
| CDY45266 | Canola | plastid | 24.26 | 32.2 |
| CDX76085 | Canola | plastid | 36.03 | 31.92 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 33.46 | 31.6 |
| CDX98771 | Canola | nucleus | 36.76 | 31.55 |
| CDY31677 | Canola | cytosol | 22.79 | 31.47 |
| CDX94128 | Canola | nucleus | 37.5 | 31.19 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 33.09 | 31.14 |
| CDX82978 | Canola | cytosol, nucleus, plastid | 36.03 | 31.11 |
| CDY41289 | Canola | nucleus | 36.03 | 31.11 |
| CDY21451 | Canola | cytosol | 27.94 | 31.02 |
| CDX83182 | Canola | cytosol | 27.57 | 30.61 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 33.46 | 30.03 |
| CDY04391 | Canola | nucleus | 35.29 | 29.36 |
| CDY65376 | Canola | nucleus | 25.37 | 25.09 |
Protein Annotations
| EnsemblPlants:CDX85952 | EnsemblPlantsGene:GSBRNA2T00143797001 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF43 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | ProteinID:CDX85952 | ProteinID:CDX85952.1 |
| SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EF465B | MapMan:35.1 | : | : |
Description
BnaC06g21820D
Coordinates
chrLK031843:+:1074987..1075856
Molecular Weight (calculated)
28480.2 Da
IEP (calculated)
6.400
GRAVY (calculated)
-0.613
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGYDQSGH SRYFHNLFRP ELHHQLQPQP QPQPQLQPQP QPQLESDDES DSNNKYPVQP DSDQVTSGST SGKRPRGRPP GSKNKPKPPV IVTRDSPNVL
101: RSHVLEVSSG ADIIESVNNY ARRRGRGRVT THGNNGGTEA GAGGIVTLHG RFEILSITGT VLPPPAPPGC GGLSIFVAGE QGRMIGGRVV APLVASGPVI
201: LMAASFSNAT FERLPLEDEG GEGGGDVGGG VPPPATSETP PSGVAQGELR VNMSGYDQFS GWGDGAAARP SF
101: RSHVLEVSSG ADIIESVNNY ARRRGRGRVT THGNNGGTEA GAGGIVTLHG RFEILSITGT VLPPPAPPGC GGLSIFVAGE QGRMIGGRVV APLVASGPVI
201: LMAASFSNAT FERLPLEDEG GEGGGDVGGG VPPPATSETP PSGVAQGELR VNMSGYDQFS GWGDGAAARP SF
001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F
Arabidopsis Description
AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.