CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72738
CDX90294
CDY08851
CDY12103
CDY14510
CDY24170
CDY36943

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42940.1	CDY24170	AT3G47620.1	21798944
AT2G42940.1	CDY36943	AT3G47620.1	21798944
AT2G42940.1	CDX72738	AT4G38800.1	21798944
AT2G42940.1	CDX90294	AT4G38800.1	21798944
AT2G42940.1	CDY12103	AT4G38800.1	21798944
AT2G42940.1	CDY08851	AT5G64780.1	21798944
AT2G42940.1	CDY14510	AT5G64780.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70947	Canola	plastid	95.79	95.79
AT2G42940.1	Thale cress	plastid	87.36	88.72
CDY53650	Canola	plastid	86.59	86.92
CDX79838	Canola	plastid	86.21	86.54
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	60.92	64.11
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	60.54	63.45
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	63.6	61.94
PGSC0003DMT400044573	Potato	cytosol	56.7	58.96
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	56.32	58.57
CDX79599	Canola	cytosol, peroxisome, plastid	44.83	42.86
CDY72485	Canola	nucleus	44.44	42.49
CDY59041	Canola	cytosol, nucleus, peroxisome	44.83	40.91
CDY31677	Canola	cytosol	29.5	39.09
CDX84222	Canola	cytosol	28.74	39.06
CDY20404	Canola	nucleus	39.46	38.01
CDX90445	Canola	plastid	39.85	37.96
CDX87591	Canola	nucleus	40.61	37.86
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	41.76	37.85
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	41.76	37.72
CDY64701	Canola	nucleus	44.44	37.3
CDY41211	Canola	plastid	42.15	37.29
CDY60321	Canola	plastid	42.15	37.16
CDX75499	Canola	cytosol, nucleus, peroxisome	42.91	37.09
CDY68242	Canola	plastid	42.15	37.04
CDY53687	Canola	nucleus	42.15	36.91
CDY45983	Canola	nucleus	40.61	36.81
CDX78802	Canola	cytosol	41.0	36.77
CDX69136	Canola	cytosol, nucleus, peroxisome	42.53	36.76
CDY37040	Canola	nucleus	43.3	36.69
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	44.06	36.62
CDY18931	Canola	nucleus	43.3	36.57
CDY54780	Canola	cytosol	40.61	36.3
CDY27387	Canola	nucleus	43.3	36.22
CDY23160	Canola	cytosol, nucleus, vacuole	38.7	36.2
CDY12779	Canola	cytosol, nucleus, vacuole	39.08	36.17
CDX74739	Canola	nucleus	42.91	36.13
CDX96613	Canola	nucleus	41.0	35.55
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	37.55	35.51
CDX68095	Canola	cytosol	36.4	35.19
CDX98771	Canola	nucleus	42.53	35.02
CDX85952	Canola	cytosol	36.4	34.93
CDY41289	Canola	nucleus	42.15	34.92
CDX82978	Canola	cytosol, nucleus, plastid	42.15	34.92
CDY02949	Canola	plastid	41.0	34.85
CDX76085	Canola	plastid	40.61	34.53
CDY33658	Canola	nucleus	38.31	34.25
CDY45266	Canola	plastid	26.82	34.15
CDX94128	Canola	nucleus	42.53	33.95
CDY31511	Canola	nucleus	34.87	33.83
CDY04391	Canola	nucleus	42.15	33.64
CDY29494	Canola	nucleus	34.1	32.48
CDY21451	Canola	cytosol	30.27	32.24
CDY31858	Canola	nucleus	33.72	32.23
CDY01347	Canola	nucleus	33.33	31.99
CDX83182	Canola	cytosol	29.89	31.84
CDY65376	Canola	nucleus	26.82	25.45

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	UniProt:A0A078FPR4	InterPro:AT-hook_nuclear	EnsemblPlants:CDY14862	ProteinID:CDY14862
ProteinID:CDY14862.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00084752001	InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF17	SUPFAM:SSF117856	UniParc:UPI0004EEB62E	SEG:seg	:

Description

BnaC04g48590DAT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPR4]

Coordinates

chrLK032047:-:762864..763649

Molecular Weight (calculated)

27609.0 Da

IEP (calculated)

9.748

GRAVY (calculated)

-0.338

Length

261 amino acids

Sequence
(BLAST)

001: MAGGTALTST SVGSKSVPMR NHEATEGGNN KNNNNKNLKA LPKPVQPASS MKGEMAKRPR GRPAGSKNKP KPPIIVTQDS PNSLRAHALE ISSRNDICET
101: LSDFARRKQR GICILSANGC VTNVTLRQPA SSGAIVTLHE HFEILSLLGS ILPPPSPVGI TGLTIYLAGP QGQVVGGGVV GGLIASGPVV LMVASFMNAV
201: FDSLPLDDDE AASMQNQQYY HNGRSHPLDD IHRLPQNLLT NGHSDSDIYS WGPAQRAISK P

Best Arabidopsis Sequence Match ( AT2G42940.1 )
(BLAST)

001: MAGGTALTPT SVGSKSVPMR NHEATERGNT NNNLRALPKA VQPVSSIEGE MAKRPRGRPA GSKNKPKPPI IVTHDSPNSL RANAVEISSG CDICETLSDF
101: ARRKQRGLCI LSANGCVTNV TLRQPASSGA IVTLHGRYEI LSLLGSILPP PAPLGITGLT IYLAGPQGQV VGGGVVGGLI ASGPVVLMAA SFMNAVFDRL
201: PMDDDEAASM QNQQYYQNGR SRPLDDIHGL PQNLLTNGNS ASDIYSWGPA QRVMSKP

Arabidopsis Description

AHL16AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VQG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.