CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45983	Canola	nucleus	98.52	92.71
Bra008262.1-P	Field mustard	nucleus	97.79	92.33
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	82.29	80.8
CDX87591	Canola	nucleus	83.03	80.36
AT1G76500.1	Thale cress	nucleus	83.76	75.17
CDX68095	Canola	cytosol	74.17	74.44
CDX85952	Canola	cytosol	74.17	73.9
CDX96613	Canola	nucleus	75.28	67.77
CDY31511	Canola	nucleus	66.42	66.91
CDY31858	Canola	nucleus	66.05	65.57
CDY01347	Canola	nucleus	65.68	65.44
CDY33658	Canola	nucleus	70.48	65.41
CDY29494	Canola	nucleus	66.05	65.33
KRH51551	Soybean	plastid	45.02	59.8
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	52.4	57.96
PGSC0003DMT400025705	Potato	plastid	53.51	55.77
Zm00001d051620_P001	Maize	plastid	55.35	47.32
Zm00001d017825_P001	Maize	plastid	55.72	46.6
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	56.09	46.34
GSMUA_Achr9P12320_001	Banana	plastid	47.97	46.26
TraesCS6D01G258400.1	Wheat	plastid	56.09	46.2
TraesCS6B01G306100.1	Wheat	plastid	56.09	46.2
TraesCS6A01G277700.1	Wheat	plastid	55.72	46.18
HORVU6Hr1G070090.1	Barley	plastid	56.09	45.92
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	56.46	45.54
CDX69136	Canola	cytosol, nucleus, peroxisome	48.71	43.71
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	50.92	43.67
CDX90445	Canola	plastid	43.91	43.43
CDX75499	Canola	cytosol, nucleus, peroxisome	48.34	43.38
KXG19929	Sorghum	nucleus	49.82	42.45
Zm00001d045928_P001	Maize	nucleus	47.6	42.16
CDX79838	Canola	plastid	40.22	41.92
CDY53650	Canola	plastid	40.22	41.92
CDX79599	Canola	cytosol, peroxisome, plastid	42.07	41.76
Os06t0326900-01	Rice	nucleus	49.45	41.61
CDY72485	Canola	nucleus	41.7	41.39
CDY23160	Canola	cytosol, nucleus, vacuole	42.44	41.22
CDY12779	Canola	cytosol, nucleus, vacuole	42.8	41.13
CDY59041	Canola	cytosol, nucleus, peroxisome	43.17	40.91
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	47.6	40.82
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	48.34	40.68
TraesCS7A01G225700.1	Wheat	nucleus	48.34	40.56
CDX78802	Canola	cytosol	43.54	40.55
CDY54780	Canola	cytosol	43.54	40.41
CDY64701	Canola	nucleus	45.76	39.87
TraesCS7D01G228800.1	Wheat	nucleus	46.49	39.62
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	45.76	39.49
CDY14862	Canola	plastid	38.01	39.46
CDY70947	Canola	plastid	38.01	39.46
CDY18931	Canola	nucleus	44.65	39.16
CDX74739	Canola	nucleus	44.65	39.03
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	38.75	38.75
CDY41211	Canola	plastid	41.7	38.31
CDY60321	Canola	plastid	41.7	38.18
CDY45266	Canola	plastid	28.78	38.05
CDY68242	Canola	plastid	41.7	38.05
CDY53687	Canola	nucleus	41.7	37.92
EER88668	Sorghum	cytosol	37.64	37.78
CDY37040	Canola	nucleus	42.8	37.66
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	39.85	37.5
CDY27387	Canola	nucleus	42.8	37.18
CDY21451	Canola	cytosol	33.58	37.14
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	39.48	37.02
CDX84222	Canola	cytosol	26.2	36.98
CDX83182	Canola	cytosol	33.21	36.73
CDY02949	Canola	plastid	40.59	35.83
TraesCS7B01G297300.1	Wheat	cytosol	38.38	35.62
CDX98771	Canola	nucleus	41.33	35.33
TraesCS7A01G395400.1	Wheat	cytosol	37.64	35.29
CDY41289	Canola	nucleus	40.96	35.24
CDX82978	Canola	cytosol, nucleus, plastid	40.96	35.24
CDY31677	Canola	cytosol	25.46	35.03
CDX94128	Canola	nucleus	42.07	34.86
CDX76085	Canola	plastid	39.48	34.85
CDY04391	Canola	nucleus	39.48	32.72
HORVU7Hr1G093230.2	Barley	cytosol	36.53	32.67
CDY65376	Canola	nucleus	30.26	29.82

Protein Annotations

EnsemblPlants:CDY20404	EnsemblPlantsGene:GSBRNA2T00012454001	Gene3D:3.30.1330.80	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF43	PFAM:PF03479	PFscan:PS51742	ProteinID:CDY20404	ProteinID:CDY20404.1	SEG:seg
SUPFAM:SSF117856	UniParc:UPI0004EEF927	UniProt:A0A078G4V6	MapMan:35.1	:	:

Description

BnaC02g24120DBnaC02g24120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4V6]

Coordinates

chrLK032107:-:452326..453189

Molecular Weight (calculated)

27873.5 Da

IEP (calculated)

7.185

GRAVY (calculated)

-0.490

Length

271 amino acids

Sequence
(BLAST)

001: MDGGYDQSGG ASRYFHGRFR SELHNQLQQQ AQAQPQPHPQ LQPDDESDSN KDSGRLDSDP VTSGSTPGKR PRGRPPGSKN KPKPPVIVTR DSPNVLRSHV
101: LEVSSGADIV ESVNTYARRR GRGVSVLSGN GTVANVVLLG GVVTLHGKFD ILSITGTVLP PPAPPGSGGL SIFLSGGQGQ VIGGNVVAPL VASGPVILMA
201: ASFSNATFER LPLKDEEEEG GGGGPPPAPT ASPPSGPGQG EIRGNPSGYD QFTGDPHSLG WVAGAASRPS F

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.