CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31858	Canola	nucleus	98.16	97.8
CDY31511	Canola	nucleus	90.81	91.82
CDY29494	Canola	nucleus	91.18	90.51
Bra012256.1-P	Field mustard	nucleus	97.43	85.76
CDY33658	Canola	nucleus	89.71	83.56
AT1G20900.1	Thale cress	nucleus	92.65	81.03
CDX96613	Canola	nucleus	88.24	79.73
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	67.28	66.3
CDY20404	Canola	nucleus	65.44	65.68
CDX87591	Canola	nucleus	67.28	65.36
CDY45983	Canola	nucleus	65.81	62.15
CDX68095	Canola	cytosol	60.66	61.11
CDX85952	Canola	cytosol	59.93	59.93
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	47.43	52.65
PGSC0003DMT400025705	Potato	plastid	48.16	50.38
KRH51551	Soybean	plastid	37.13	49.51
GSMUA_Achr9P12320_001	Banana	plastid	45.59	44.13
TraesCS6A01G277700.1	Wheat	plastid	52.94	44.04
Zm00001d051620_P001	Maize	plastid	50.74	43.53
HORVU6Hr1G070090.1	Barley	plastid	52.94	43.5
TraesCS6D01G258400.1	Wheat	plastid	52.57	43.47
TraesCS6B01G306100.1	Wheat	plastid	52.57	43.47
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	52.21	43.29
Zm00001d017825_P001	Maize	plastid	51.47	43.21
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	52.57	42.56
CDX69136	Canola	cytosol, nucleus, peroxisome	45.96	41.39
Zm00001d045928_P001	Maize	nucleus	46.32	41.18
CDX75499	Canola	cytosol, nucleus, peroxisome	45.22	40.73
KXG19929	Sorghum	nucleus	47.06	40.25
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	46.69	40.19
TraesCS7A01G225700.1	Wheat	nucleus	46.69	39.32
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	44.49	38.29
Os06t0326900-01	Rice	nucleus	45.22	38.2
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	45.22	38.2
TraesCS7D01G228800.1	Wheat	nucleus	44.12	37.74
CDX90445	Canola	plastid	37.13	36.86
CDX79599	Canola	cytosol, peroxisome, plastid	36.03	35.9
CDX79838	Canola	plastid	34.19	35.77
CDY53650	Canola	plastid	34.19	35.77
CDY72485	Canola	nucleus	35.66	35.53
CDY23160	Canola	cytosol, nucleus, vacuole	36.03	35.13
CDY12779	Canola	cytosol, nucleus, vacuole	36.4	35.11
CDY18931	Canola	nucleus	39.71	34.95
CDX74739	Canola	nucleus	39.71	34.84
CDY64701	Canola	nucleus	39.71	34.73
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	40.07	34.71
CDX78802	Canola	cytosol	37.13	34.71
CDY54780	Canola	cytosol	37.13	34.59
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	34.19	34.32
CDY59041	Canola	cytosol, nucleus, peroxisome	36.03	34.27
CDY70947	Canola	plastid	32.35	33.72
CDY37040	Canola	nucleus	37.87	33.44
CDY14862	Canola	plastid	31.99	33.33
EER88668	Sorghum	cytosol	33.09	33.33
CDY41211	Canola	plastid	36.03	33.22
CDY60321	Canola	plastid	36.03	33.11
CDY27387	Canola	nucleus	37.87	33.01
CDY68242	Canola	plastid	36.03	33.0
CDY53687	Canola	nucleus	36.03	32.89
CDY41289	Canola	nucleus	37.5	32.38
CDX82978	Canola	cytosol, nucleus, plastid	37.5	32.38
CDX98771	Canola	nucleus	37.5	32.18
TraesCS7B01G297300.1	Wheat	cytosol	34.19	31.85
CDY02949	Canola	plastid	35.66	31.6
CDX94128	Canola	nucleus	37.87	31.5
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	33.09	31.25
TraesCS7A01G395400.1	Wheat	cytosol	33.09	31.14
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	33.09	31.14
CDX76085	Canola	plastid	34.56	30.62
CDY21451	Canola	cytosol	27.57	30.61
CDX83182	Canola	cytosol	27.21	30.2
CDX84222	Canola	cytosol	20.96	29.69
CDY04391	Canola	nucleus	35.29	29.36
CDY45266	Canola	plastid	21.69	28.78
CDY31677	Canola	cytosol	20.59	28.43
HORVU7Hr1G093230.2	Barley	cytosol	31.62	28.38
CDY65376	Canola	nucleus	23.16	22.91

Protein Annotations

EnsemblPlants:CDY01347	EnsemblPlantsGene:GSBRNA2T00112318001	InterPro:AT-hook_nuclear	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100
PANTHER:PTHR31100:SF5	PFAM:PF03479	PFscan:PS51742	PIRSF:PIRSF016021	ProteinID:CDY01347	ProteinID:CDY01347.1
SEG:seg	SUPFAM:SSF117856	UniParc:UPI0004EEA762	MapMan:35.1	:	:

Description

BnaA07g11200D

Coordinates

chrLK031926:-:450458..451390

Molecular Weight (calculated)

28476.8 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.783

Length

272 amino acids

Sequence
(BLAST)

001: MEGGYEQGGG ANSRYFHNLF RPEIHHQQFQ PQGGINLIDQ HHHQQQHEHQ QQQPSDDSRE SDHSNKDHHQ PGGPDSSDRA TSSSAPGKRP RGRPPGSKNK
101: AKPPIIVTRD SPNALKSHVL EVSPGADIVE SVSTYARRRG RGVSVLGGNG TVSNVTLPGG VVTLHGRFEI LSLTGTVLPP PAPPGAGAPV ILMATSFSNA
201: VFERLPIEEE EEEGGDGGGG GAPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSADPHLHG WGAGTPSRPP FN

Best Arabidopsis Sequence Match ( AT1G20900.1 )
(BLAST)

001: MEGGYEQGGG ASRYFHNLFR PEIHHQQLQP QGGINLIDQH HHQHQQHQQQ QQPSDDSRES DHSNKDHHQQ GRPDSDPNTS SSAPGKRPRG RPPGSKNKAK
101: PPIIVTRDSP NALRSHVLEV SPGADIVESV STYARRRGRG VSVLGGNGTV SNVTLRQPVT PGNGGGVSGG GGVVTLHGRF EILSLTGTVL PPPAPPGAGG
201: LSIFLAGGQG QVVGGSVVAP LIASAPVILM AASFSNAVFE RLPIEEEEEE GGGGGGGGGG GPPQMQQAPS ASPPSGVTGQ GQLGGNVGGY GFSGDPHLLG
301: WGAGTPSRPP F

Arabidopsis Description

AHL27AT-hook motif nuclear-localized protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7C9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.