Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41289 | Canola | nucleus | 99.37 | 99.37 |
| Bra013649.1-P | Field mustard | nucleus | 98.1 | 94.79 |
| CDX98771 | Canola | nucleus | 93.65 | 93.06 |
| CDX94128 | Canola | nucleus | 92.7 | 89.3 |
| AT4G22810.1 | Thale cress | nucleus | 89.21 | 86.73 |
| CDY04391 | Canola | nucleus | 77.78 | 74.92 |
| CDY37040 | Canola | nucleus | 55.87 | 57.14 |
| CDY27387 | Canola | nucleus | 56.19 | 56.73 |
| CDY18931 | Canola | nucleus | 55.56 | 56.63 |
| CDX74739 | Canola | nucleus | 54.92 | 55.81 |
| CDX90445 | Canola | plastid | 44.44 | 51.09 |
| CDX79599 | Canola | cytosol, peroxisome, plastid | 43.81 | 50.55 |
| CDY72485 | Canola | nucleus | 43.81 | 50.55 |
| CDX78802 | Canola | cytosol | 45.08 | 48.8 |
| CDY59041 | Canola | cytosol, nucleus, peroxisome | 44.13 | 48.6 |
| CDY54780 | Canola | cytosol | 44.76 | 48.29 |
| Os06t0136900-01 | Rice | nucleus | 49.84 | 47.87 |
| CDY23160 | Canola | cytosol, nucleus, vacuole | 41.59 | 46.95 |
| CDY12779 | Canola | cytosol, nucleus, vacuole | 41.9 | 46.81 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 50.48 | 45.56 |
| CDY53650 | Canola | plastid | 37.46 | 45.38 |
| CDX79838 | Canola | plastid | 37.46 | 45.38 |
| TraesCS7D01G072200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 48.57 | 44.09 |
| CDY21124 | Canola | cytosol, endoplasmic reticulum, peroxisome | 40.0 | 43.75 |
| Zm00001d036088_P001 | Maize | extracellular | 38.73 | 43.57 |
| CDY64701 | Canola | nucleus | 42.86 | 43.41 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 47.62 | 43.35 |
| CDY30003 | Canola | cytosol, nucleus, peroxisome, plastid | 39.68 | 43.25 |
| Zm00001d045427_P001 | Maize | cytosol, nucleus, plasma membrane | 46.67 | 43.11 |
| CDY49327 | Canola | cytosol, endoplasmic reticulum, nucleus | 42.54 | 42.68 |
| CDY31677 | Canola | cytosol | 26.67 | 42.64 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 47.62 | 42.61 |
| CDX84222 | Canola | cytosol | 25.71 | 42.19 |
| CDY14862 | Canola | plastid | 34.92 | 42.15 |
| CDY70947 | Canola | plastid | 34.92 | 42.15 |
| EER89149 | Sorghum | cytosol, nucleus, plastid | 45.71 | 41.26 |
| CDX87591 | Canola | nucleus | 36.51 | 41.07 |
| CDX75499 | Canola | cytosol, nucleus, peroxisome | 39.37 | 41.06 |
| CDY20404 | Canola | nucleus | 35.24 | 40.96 |
| CDX69136 | Canola | cytosol, nucleus, peroxisome | 39.05 | 40.73 |
| CDY45983 | Canola | nucleus | 36.83 | 40.28 |
| CDX96613 | Canola | nucleus | 38.1 | 39.87 |
| CDX88286 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.92 | 39.86 |
| CDY45266 | Canola | plastid | 25.71 | 39.51 |
| CDY41211 | Canola | plastid | 36.83 | 39.32 |
| CDY68242 | Canola | plastid | 36.83 | 39.06 |
| CDY31511 | Canola | nucleus | 32.7 | 38.29 |
| CDY02949 | Canola | plastid | 37.14 | 38.11 |
| CDY60321 | Canola | plastid | 35.56 | 37.84 |
| CDX76085 | Canola | plastid | 36.83 | 37.78 |
| CDY31858 | Canola | nucleus | 32.7 | 37.73 |
| CDY33658 | Canola | nucleus | 34.92 | 37.67 |
| CDY53687 | Canola | nucleus | 35.56 | 37.58 |
| CDY21451 | Canola | cytosol | 29.21 | 37.55 |
| CDY01347 | Canola | nucleus | 32.38 | 37.5 |
| CDX68095 | Canola | cytosol | 32.06 | 37.41 |
| CDX83182 | Canola | cytosol | 28.89 | 37.14 |
| CDY29494 | Canola | nucleus | 32.06 | 36.86 |
| CDX85952 | Canola | cytosol | 31.11 | 36.03 |
| CDY65376 | Canola | nucleus | 26.35 | 30.18 |
Protein Annotations
| EnsemblPlants:CDX82978 | EnsemblPlantsGene:GSBRNA2T00138402001 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| ncoils:Coil | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF15 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 |
| ProteinID:CDX82978 | ProteinID:CDX82978.1 | SEG:seg | SUPFAM:SSF117856 | UniParc:UPI0004EF2022 | MapMan:35.1 |
Description
BnaC01g14280D
Coordinates
chrLK031830:+:1946947..1947924
Molecular Weight (calculated)
33165.0 Da
IEP (calculated)
6.432
GRAVY (calculated)
-0.652
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVQSHGSQ SSLPPTFHSR DFQLHLQQQQ QQQENQTDQD DHQGGGGLNR QIKMDREETS DNMDNMANNS GSEGKDMNLG EGGSGGGGSG GDQMTRRPRG
101: RPAGSKNKPK PPIIITRDSA NALRTHVMEI GDGCDLVESV ATFARRRQRG VCVMSGTGNV MNVTIRQPGS PSPGSVVSLH GRFEILSLSG SFLPPPAPPN
201: ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGSMEPPPMM GGPMPHQQQA MSAHQGLPPN LLGPAHQGLP
301: QHDNQSYWST GRPPY
101: RPAGSKNKPK PPIIITRDSA NALRTHVMEI GDGCDLVESV ATFARRRQRG VCVMSGTGNV MNVTIRQPGS PSPGSVVSLH GRFEILSLSG SFLPPPAPPN
201: ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGSMEPPPMM GGPMPHQQQA MSAHQGLPPN LLGPAHQGLP
301: QHDNQSYWST GRPPY
001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
Arabidopsis Description
AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.