Factsheet for Os06t0136900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21924254

gfp PMID: 21924254 doi

Y Jin, Q Luo, H Tong, A Wang, Z Cheng, J Tang, D Li, X Zhao, X Li, J Wan, Y Jiao, C Chu, L Zhu

State Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G12050.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	71.34	67.63
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	71.34	67.44
HORVU7Hr1G017700.2	Barley	nucleus	71.04	66.76
TraesCS4A01G374700.1	Wheat	nucleus	71.34	66.48
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	58.54	56.3
EER89149	Sorghum	cytosol, nucleus, plastid	58.84	55.3
Zm00001d036088_P001	Maize	extracellular	44.82	52.5
Os08t0563200-01	Rice	cytosol	35.98	50.21
AT4G22810.1	Thale cress	nucleus	49.39	50.0
Os02t0448000-00	Rice	nucleus	48.17	50.0
CDX82978	Canola	cytosol, nucleus, plastid	47.87	49.84
CDY41289	Canola	nucleus	47.56	49.52
CDX98771	Canola	nucleus	47.56	49.21
Os08t0159700-01	Rice	cytosol	42.38	48.1
Bra019355.1-P	Field mustard	nucleus	47.87	48.01
CDX94128	Canola	nucleus	47.87	48.01
Bra013649.1-P	Field mustard	nucleus	47.56	47.85
AT4G12050.1	Thale cress	cytosol, nucleus, plastid	49.39	47.79
CDY04391	Canola	nucleus	46.95	47.09
Os02t0820800-00	Rice	cytosol, nucleus, peroxisome	36.89	45.49
Os03t0270000-01	Rice	nucleus	35.67	45.35
Os04t0590200-01	Rice	cytosol	41.77	44.92
Os07t0235200-01	Rice	endoplasmic reticulum, extracellular	24.7	42.86
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	42.68	41.67
Os06t0326900-01	Rice	nucleus	38.72	39.44
Os01t0246601-00	Rice	plastid	24.7	35.53
Os01t0953801-00	Rice	nucleus	26.22	32.45
Os08t0478466-01	Rice	nucleus	28.35	28.7
Os09t0464300-00	Rice	nucleus	28.66	28.14

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:4340045	EMBL:AK107405	ProteinID:BAD68464.1	ProteinID:BAF18644.1
ProteinID:BAS96040.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005175	EnsemblPlantsGene:Os06g0136900	EnsemblPlants:Os06t0136900-01	PFAM:PF03479	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF2	UniProt:Q5VQ11	SUPFAM:SSF117856	UniParc:UPI0000457E90	RefSeq:XP_015641725.1
SEG:seg	:	:	:	:	:

Description

DEPRESSED PALEA 1Protein of unknown function DUF296 domain containing protein. (Os06t0136900-01)

Coordinates

chr6:-:1962306..1963580

Molecular Weight (calculated)

33418.3 Da

IEP (calculated)

7.090

GRAVY (calculated)

-0.273

Length

328 amino acids

Sequence
(BLAST)

001: MDPVTAAAAH GGGHHHHHHF GAPPVAAFHH HPFHHGGGAH YPAAFQQFQE EQQQLVAAAA AAGGMAKQEL VDESNNTINS GGSNGSGGEE QRQQSGEEQH
101: QQGAAAPVVI RRPRGRPAGS KNKPKPPVII TRDSASALRA HVLEVASGCD LVDSVATFAR RRQVGVCVLS ATGAVTNVSV RQPGAGPGAV VNLTGRFDIL
201: SLSGSFLPPP APPSATGLTV YVSGGQGQVV GGTVAGPLIA VGPVVIMAAS FGNAAYERLP LEDDEPPQHM AGGGQSSPPP PPLPLPPHQQ PILQDHLPHN
301: LMNGIHLPGD AAYGWTSGGG GGGRAAPY

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.