Factsheet for AT4G12050.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04391	Canola	nucleus	88.2	91.44
AT4G22810.1	Thale cress	nucleus	82.3	86.11
AT2G45430.1	Thale cress	nucleus	55.16	58.99
AT3G60870.1	Thale cress	nucleus	46.02	58.87
AT4G17800.1	Thale cress	cytosol	43.95	51.03
AT4G14465.1	Thale cress	cytosol, nucleus, plastid	41.89	50.53
Os06t0136900-01	Rice	nucleus	47.79	49.39
HORVU7Hr1G017700.2	Barley	nucleus	48.38	46.99
Zm00001d036088_P001	Maize	extracellular	38.35	46.43
AT2G35270.1	Thale cress	nucleus	38.94	46.32
Zm00001d045427_P001	Maize	cytosol, nucleus, plasma membrane	46.02	45.75
TraesCS7D01G072200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	46.61	45.53
AT2G42940.1	Thale cress	plastid	34.51	45.53
TraesCS7A01G076500.1	Wheat	cytosol, endoplasmic reticulum, nucleus	45.72	44.8
EER89149	Sorghum	cytosol, nucleus, plastid	46.02	44.7
TraesCS4A01G374700.1	Wheat	nucleus	45.72	44.03
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	39.23	42.22
AT4G35390.1	Thale cress	cytosol	37.17	42.14
AT3G55560.1	Thale cress	plastid	37.46	40.97
AT1G20900.1	Thale cress	nucleus	36.87	40.19
AT1G14490.2	Thale cress	plastid	25.96	39.11
AT1G76500.1	Thale cress	nucleus	33.92	38.08
AT5G49700.1	Thale cress	nucleus	28.91	35.51

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	EntrezGene:826813	UniProt:A0A178V276	EMBL:AB493679	ProteinID:AEE83091.1
EMBL:AK228172	InterPro:AT-hook_nuclear	ArrayExpress:AT4G12050	EnsemblPlantsGene:AT4G12050	RefSeq:AT4G12050	TAIR:AT4G12050
RefSeq:AT4G12050-TAIR-G	EnsemblPlants:AT4G12050.1	TAIR:AT4G12050.1	EMBL:BR000362	EMBL:BT009731	ProteinID:CAB40946.1
ProteinID:CAB78248.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR005175	RefSeq:NP_192942.1	ProteinID:OAP00319.1	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	UniProt:Q9SZ70	SUPFAM:SSF117856	UniParc:UPI000009E56B
SEG:seg	:	:	:	:	:

Description

AHL26AT-hook motif nuclear-localized protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ70]

Coordinates

chr4:-:7219652..7222166

Molecular Weight (calculated)

35787.2 Da

IEP (calculated)

6.957

GRAVY (calculated)

-0.617

Length

339 amino acids

Sequence
(BLAST)

001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QHQQQHQQQQ QQQFFLHHHQ QPQRNLDQDH EQQGGSILNR SIKMDREETS DNMDNIANTN SGSEGKEMSL
101: HGGEGGSGGG GSGEQMTRRP RGRPAGSKNK PKAPIIITRD SANALRTHVM EIGDGCDIVD CMATFARRRQ RGVCVMSGTG SVTNVTIRQP GSPPGSVVSL
201: HGRFEILSLS GSFLPPPAPP AATGLSVYLA GGQGQVVGGS VVGPLLCSGP VVVMAASFSN AAYERLPLEE DEMQTPVQGG GGGGGGGGGM GSPPMMGQQQ
301: AMAAMAAAQG LPPNLLGSVQ LPPPQQNDQQ YWSTGRPPY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.