Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90445 | Canola | plastid | 89.04 | 94.89 |
| CDX78802 | Canola | cytosol | 94.18 | 94.5 |
| Bra012639.1-P | Field mustard | cytosol | 94.18 | 94.5 |
| Bra040183.1-P | Field mustard | cytosol | 94.52 | 94.2 |
| CDY54780 | Canola | cytosol | 93.15 | 93.15 |
| VIT_02s0012g00880.t01 | Wine grape | cytosol | 72.26 | 74.82 |
| KRH58197 | Soybean | cytosol | 66.44 | 70.29 |
| PGSC0003DMT400002959 | Potato | nucleus | 62.33 | 68.68 |
| AT2G35270.1 | Thale cress | nucleus | 66.78 | 68.42 |
| KRH04340 | Soybean | cytosol | 58.56 | 68.13 |
| Solyc08g077010.1.1 | Tomato | cytosol | 65.75 | 66.67 |
| PGSC0003DMT400045203 | Potato | nucleus | 65.41 | 65.86 |
| GSMUA_Achr5P03390_001 | Banana | nucleus | 54.45 | 61.39 |
| GSMUA_Achr2P04780_001 | Banana | cytosol, nucleus, plastid | 51.37 | 58.82 |
| GSMUA_Achr5P13920_001 | Banana | nucleus | 41.78 | 53.74 |
| AT3G60870.1 | Thale cress | nucleus | 44.18 | 48.68 |
| AT2G45430.1 | Thale cress | nucleus | 51.71 | 47.63 |
| AT4G22810.1 | Thale cress | nucleus | 49.66 | 44.75 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 42.81 | 44.48 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 51.03 | 43.95 |
| AT4G35390.1 | Thale cress | cytosol | 44.52 | 43.48 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 46.23 | 42.86 |
| AT2G42940.1 | Thale cress | plastid | 36.99 | 42.02 |
| AT1G76500.1 | Thale cress | nucleus | 42.47 | 41.06 |
| AT1G20900.1 | Thale cress | nucleus | 42.81 | 40.19 |
| AT3G55560.1 | Thale cress | plastid | 41.44 | 39.03 |
| AT1G14490.2 | Thale cress | plastid | 28.77 | 37.33 |
| AT5G49700.1 | Thale cress | nucleus | 33.22 | 35.14 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:827502 | UniProt:A0A178UYA9 | ProteinID:AEE83952.1 | EMBL:AF446359 |
| ArrayExpress:AT4G17800 | EnsemblPlantsGene:AT4G17800 | RefSeq:AT4G17800 | TAIR:AT4G17800 | RefSeq:AT4G17800-TAIR-G | EnsemblPlants:AT4G17800.1 |
| TAIR:AT4G17800.1 | EMBL:AY097416 | EMBL:BR000359 | ProteinID:CAB10560.1 | ProteinID:CAB78783.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 | RefSeq:NP_193515.1 |
| UniProt:O23620 | ProteinID:OAO97651.1 | PFAM:PF03479 | PO:PO:0000037 | PO:PO:0001078 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009046 | PO:PO:0020100 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF14 | SUPFAM:SSF117856 | UniParc:UPI000009CC76 |
| SEG:seg | : | : | : | : | : |
Description
AHL23AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620]
Coordinates
chr4:-:9895094..9896688
Molecular Weight (calculated)
29725.9 Da
IEP (calculated)
6.415
GRAVY (calculated)
-0.231
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGLDLGTAF RYVNHQLHRP DLHLHHNSSS DDVTPGAGMG HFTVDDEDNN NNHQGLDLAS GGGSGSSGGG GGHGGGGDVV GRRPRGRPPG SKNKPKPPVI
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF
101: ITRESANTLR AHILEVTNGC DVFDCVATYA RRRQRGICVL SGSGTVTNVS IRQPSAAGAV VTLQGTFEIL SLSGSFLPPP APPGATSLTI FLAGGQGQVV
201: GGSVVGELTA AGPVIVIAAS FTNVAYERLP LEEDEQQQQL GGGSNGGGNL FPEVAAGGGG GLPFFNLPMN MQPNVQLPVE GWPGNSGGRG PF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.