Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026211.1-P | Field mustard | plastid | 61.33 | 67.32 |
| CDY45266 | Canola | plastid | 60.89 | 66.83 |
| AT5G49700.1 | Thale cress | nucleus | 79.56 | 64.86 |
| CDY65376 | Canola | nucleus | 66.22 | 54.18 |
| KRH62181 | Soybean | nucleus | 60.0 | 48.21 |
| KRH52892 | Soybean | nucleus | 60.0 | 47.54 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 39.11 | 47.31 |
| KRH72453 | Soybean | nucleus | 56.0 | 46.49 |
| PGSC0003DMT400024250 | Potato | cytosol, plastid | 52.89 | 44.24 |
| KRH16838 | Soybean | nucleus | 49.33 | 43.36 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 37.78 | 41.46 |
| Solyc12g087950.1.1 | Tomato | nucleus | 47.11 | 39.85 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 43.11 | 39.59 |
| PGSC0003DMT400005182 | Potato | nucleus | 45.78 | 38.43 |
| GSMUA_Achr10P... | Banana | nucleus | 46.67 | 37.63 |
| Solyc04g076220.2.1 | Tomato | nucleus | 55.11 | 36.9 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 36.89 | 36.56 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 41.33 | 33.1 |
| AT3G60870.1 | Thale cress | nucleus | 36.0 | 30.57 |
| AT2G35270.1 | Thale cress | nucleus | 38.67 | 30.53 |
| AT2G42940.1 | Thale cress | plastid | 34.67 | 30.35 |
| AT4G35390.1 | Thale cress | cytosol | 39.56 | 29.77 |
| AT3G55560.1 | Thale cress | plastid | 40.44 | 29.35 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 38.22 | 29.25 |
| Os09t0464300-00 | Rice | nucleus | 43.11 | 29.04 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 40.44 | 28.89 |
| Zm00001d020768_P001 | Maize | cytosol | 42.67 | 28.83 |
| AT4G17800.1 | Thale cress | cytosol | 37.33 | 28.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.22 | 28.36 |
| KXG25333 | Sorghum | cytosol | 41.78 | 28.23 |
| Os08t0478466-01 | Rice | nucleus | 40.0 | 27.78 |
| Zm00001d005923_P001 | Maize | nucleus | 42.22 | 27.62 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 40.44 | 27.16 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.44 | 27.08 |
| AT4G22810.1 | Thale cress | nucleus | 38.67 | 26.85 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 40.44 | 26.76 |
| AT1G20900.1 | Thale cress | nucleus | 36.89 | 26.69 |
| OQU89633 | Sorghum | cytosol | 41.78 | 26.55 |
| AT1G76500.1 | Thale cress | nucleus | 35.56 | 26.49 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 39.11 | 25.96 |
| AT2G45430.1 | Thale cress | nucleus | 36.44 | 25.87 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:838011 | UniProt:A0A1P8AR37 | ProteinID:AAF43950.1 | ProteinID:AEE29171.1 |
| ProteinID:ANM59122.1 | InterPro:AT-hook_nuclear | ArrayExpress:AT1G14490 | EnsemblPlantsGene:AT1G14490 | RefSeq:AT1G14490 | TAIR:AT1G14490 |
| RefSeq:AT1G14490-TAIR-G | EnsemblPlants:AT1G14490.2 | Unigene:At.49445 | ProteinID:BAH30295.1 | EMBL:BR000364 | EMBL:BT029503 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 |
| RefSeq:NP_001321512.1 | RefSeq:NP_172901.1 | ProteinID:OAP11775.1 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom |
| PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF1 | SUPFAM:SSF117856 | UniParc:UPI00004A8BD3 | SEG:seg |
Description
Predicted AT-hook DNA-binding family protein [Source:TAIR;Acc:AT1G14490]
Coordinates
chr1:-:4958445..4959529
Molecular Weight (calculated)
23559.0 Da
IEP (calculated)
8.690
GRAVY (calculated)
-0.193
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSKLPTQRH LHLSPSSPSM ETVGRPRGRP RGSKNKPKAP IFVTIDPPMS PYILEVPSGN DVVEALNRFC RGKAIGFCVL SGSGSVADVT LRQPSPAAPG
101: STITFHGKFD LLSVSATFLP PLPPTSLSPP VSNFFTVSLA GPQGKVIGGF VAGPLVAAGT VYFVATSFKN PSYHRLPATE EEQRNSAEGE EEGQSPPVSG
201: GGGESMYVGG SDVIWDPNAK APSPY
101: STITFHGKFD LLSVSATFLP PLPPTSLSPP VSNFFTVSLA GPQGKVIGGF VAGPLVAAGT VYFVATSFKN PSYHRLPATE EEQRNSAEGE EEGQSPPVSG
201: GGGESMYVGG SDVIWDPNAK APSPY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.