Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76289 | Soybean | nucleus | 60.0 | 55.21 |
| AT2G45430.1 | Thale cress | nucleus | 64.91 | 54.26 |
| VIT_15s0048g00780.t01 | Wine grape | nucleus | 60.38 | 53.33 |
| KRH65251 | Soybean | nucleus | 61.51 | 52.58 |
| Solyc01g091470.2.1 | Tomato | nucleus | 57.74 | 50.66 |
| PGSC0003DMT400033248 | Potato | nucleus | 58.49 | 50.32 |
| AT4G22810.1 | Thale cress | nucleus | 57.74 | 47.22 |
| AT4G14465.1 | Thale cress | cytosol, nucleus, plastid | 49.06 | 46.26 |
| GSMUA_Achr1P19850_001 | Banana | nucleus | 53.58 | 46.25 |
| AT4G12050.1 | Thale cress | cytosol, nucleus, plastid | 58.87 | 46.02 |
| AT4G17800.1 | Thale cress | cytosol | 48.68 | 44.18 |
| AT2G42940.1 | Thale cress | plastid | 41.13 | 42.41 |
| AT2G35270.1 | Thale cress | nucleus | 43.4 | 40.35 |
| AT3G04570.1 | Thale cress | cytosol, mitochondrion, peroxisome | 47.55 | 40.0 |
| AT3G55560.1 | Thale cress | plastid | 44.91 | 38.39 |
| AT4G35390.1 | Thale cress | cytosol | 43.02 | 38.13 |
| AT1G20900.1 | Thale cress | nucleus | 44.53 | 37.94 |
| AT1G76500.1 | Thale cress | nucleus | 41.51 | 36.42 |
| AT1G14490.2 | Thale cress | plastid | 30.57 | 36.0 |
| GSMUA_Achr3P11300_001 | Banana | nucleus | 29.06 | 33.62 |
| AT5G49700.1 | Thale cress | nucleus | 32.83 | 31.52 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EntrezGene:825258 | ProteinID:AEE80119.1 | Symbol:AHL18 | InterPro:AT-hook_nuclear |
| ArrayExpress:AT3G60870 | EnsemblPlantsGene:AT3G60870 | RefSeq:AT3G60870 | TAIR:AT3G60870 | RefSeq:AT3G60870-TAIR-G | EnsemblPlants:AT3G60870.1 |
| TAIR:AT3G60870.1 | EMBL:BR000354 | ProteinID:CAB82691.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 |
| GO:GO:0010228 | InterPro:IPR005175 | RefSeq:NP_191646.1 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom |
| PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF2 | UniProt:Q9LZX7 | SUPFAM:SSF117856 | UniParc:UPI00000A9780 |
| SEG:seg | : | : | : | : | : |
Description
AHL18AT-hook motif nuclear-localized protein 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZX7]
Coordinates
chr3:+:22492811..22494253
Molecular Weight (calculated)
28413.5 Da
IEP (calculated)
8.110
GRAVY (calculated)
-0.464
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEVSRSHTP QFLSSDHQHY HHQNAGRQKR GREEEGVEPN NIGEDLATFP SGEENIKKRR PRGRPAGSKN KPKAPIIVTR DSANAFRCHV MEITNACDVM
101: ESLAVFARRR QRGVCVLTGN GAVTNVTVRQ PGGGVVSLHG RFEILSLSGS FLPPPAPPAA SGLKVYLAGG QGQVIGGSVV GPLTASSPVV VMAASFGNAS
201: YERLPLEEEE ETEREIDGNA ARAIGTQTQK QLMQDATSFI GSPSNLINSV SLPGEAYWGT QRPSF
101: ESLAVFARRR QRGVCVLTGN GAVTNVTVRQ PGGGVVSLHG RFEILSLSGS FLPPPAPPAA SGLKVYLAGG QGQVIGGSVV GPLTASSPVV VMAASFGNAS
201: YERLPLEEEE ETEREIDGNA ARAIGTQTQK QLMQDATSFI GSPSNLINSV SLPGEAYWGT QRPSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.