Factsheet for Solyc01g091470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033248	Potato	nucleus	94.04	92.21
VIT_15s0048g00780.t01	Wine grape	nucleus	71.19	71.67
Solyc06g060500.1.1	Tomato	nucleus	50.66	69.55
Solyc08g079720.2.1	Tomato	nucleus	63.91	66.1
KRH76289	Soybean	nucleus	62.25	65.28
KRH65251	Soybean	nucleus	65.56	63.87
CDY18931	Canola	nucleus	62.58	61.16
Bra039338.1-P	Field mustard	nucleus	62.25	61.04
CDY37040	Canola	nucleus	62.25	61.04
Bra004911.1-P	Field mustard	nucleus	61.92	60.71
CDX74739	Canola	nucleus	62.25	60.65
CDY27387	Canola	nucleus	62.25	60.26
AT2G45430.1	Thale cress	nucleus	63.24	60.25
Solyc08g007560.1.1	Tomato	nucleus	61.59	58.31
AT3G60870.1	Thale cress	nucleus	50.66	57.74
GSMUA_Achr1P19850_001	Banana	nucleus	58.28	57.33
Solyc01g080960.2.1	Tomato	nucleus	47.02	53.58
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	43.38	53.47
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	42.72	51.39
Solyc11g006090.1.1	Tomato	nucleus	42.05	49.8
Solyc08g077010.1.1	Tomato	cytosol	46.69	48.96
Solyc09g089620.1.1	Tomato	nucleus	45.03	47.55
GSMUA_Achr3P11300_001	Banana	nucleus	33.11	43.67
Solyc05g053000.1.1	Tomato	nucleus	41.39	39.94
Solyc12g087950.1.1	Tomato	nucleus	28.48	32.33
Solyc04g076220.2.1	Tomato	nucleus	34.11	30.65

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4AZ87	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF2	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc01g091470.2
EnsemblPlants:Solyc01g091470.2.1	UniParc:UPI00027681EB	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4AZ87]

Coordinates

chr1:+:85100056..85101602

Molecular Weight (calculated)

31883.3 Da

IEP (calculated)

8.126

GRAVY (calculated)

-0.591

Length

302 amino acids

Sequence
(BLAST)

001: MDQLTAHGRP LPPPFHTRDV QLQNNNPHLH AQFHHIQQQQ KSEDEQQSGH RNQKRDRDDN FSLNPDPSGS MDSKGNNTIG DGGRRPRGRP AGSKNKPKPP
101: IIITRDSANA LRSHVMEIAT GCDIQESISN FATRRQRGVC ILSASGTVTN VTIRQPASPG AVVTLHGRFE ILSLSGSYLP PPAPPAASGL TIYLAGGQGQ
201: VVGGSVVGPL NASGPVVIMA ASFGNAAYER LPLEDEESPV GQQGSGGNLG TSTNQGAAAA QQIMGTDPNA NNLLQGLPQN LLNSCQLPPA EAYWGPGARP
301: PY

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.