Factsheet for Solyc08g079720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010004	Potato	nucleus	96.58	96.25
Solyc06g060500.1.1	Tomato	nucleus	65.07	86.36
Solyc08g007560.1.1	Tomato	nucleus	83.56	76.49
VIT_02s0025g05100.t01	Wine grape	nucleus	78.42	75.83
KRH77431	Soybean	nucleus	71.58	69.67
KRH57320	Soybean	nucleus	67.47	69.61
KRH28008	Soybean	nucleus	70.21	68.79
KRH04051	Soybean	nucleus	67.47	68.64
Solyc01g091470.2.1	Tomato	nucleus	66.1	63.91
TraesCS6D01G167600.1	Wheat	nucleus	59.93	56.63
HORVU6Hr1G037630.1	Barley	nucleus	59.59	56.31
HORVU6Hr1G037640.1	Barley	nucleus	59.59	56.31
TraesCS6B01G209300.1	Wheat	nucleus	59.25	55.99
TraesCS6A01G176200.1	Wheat	nucleus	59.25	55.99
Zm00001d016132_P001	Maize	nucleus	58.9	55.66
Os02t0448000-00	Rice	nucleus	59.93	55.38
EES04848	Sorghum	nucleus	59.93	53.52
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	44.86	53.47
Solyc07g056300.1.1	Tomato	cytosol, nucleus, peroxisome	45.21	52.59
Zm00001d053429_P001	Maize	nucleus	57.53	52.5
Solyc01g080960.2.1	Tomato	nucleus	46.23	50.94
Solyc11g006090.1.1	Tomato	nucleus	43.15	49.41
Solyc08g077010.1.1	Tomato	cytosol	48.29	48.96
Solyc09g089620.1.1	Tomato	nucleus	46.58	47.55
Solyc05g053000.1.1	Tomato	nucleus	41.1	38.34
Solyc12g087950.1.1	Tomato	nucleus	28.08	30.83
Solyc04g076220.2.1	Tomato	nucleus	34.25	29.76

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:K4CNX2	PFAM:PF03479	PIRSF:PIRSF016021
InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF15	SUPFAM:SSF117856	EnsemblPlantsGene:Solyc08g079720.2
EnsemblPlants:Solyc08g079720.2.1	UniParc:UPI000276B304	SEG:seg	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:K4CNX2]

Coordinates

chr8:-:63203075..63204198

Molecular Weight (calculated)

31087.5 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.577

Length

292 amino acids

Sequence
(BLAST)

001: MDQMNHSLPP PFHTRDFNLH QFHQNSEDEQ SGTSGLNMSG QKRDRDDNNN NNNNNENSNG GESKDGLGNS GDGEMSRRPR GRPSGSKNKP KPPIIITRDS
101: ANALRTHVME IADGCDIMES ISNFARRRQR GVCIMSGTGV VTNVNLRQPA SPGAIVTLHG RFEILSLAGS FLPPPAPPAA SGLTIYLAGG QGQVVGGSVV
201: GALMASGPVV IMSASFSNAA YERLPLEEDD QNHPLPIVPG GGSLGSPPGN IGQQQQQQIM ADPSLFHGMP PNLLNSIQLP SEPYWATGRP PF

Best Arabidopsis Sequence Match ( AT2G45430.1 )
(BLAST)

001: MDQVSRSLPP PFLSRDLHLH PHHQFQHQQQ QQQQNHGHDI DQHRIGGLKR DRDADIDPNE HSSAGKDQST PGSGGESGGG GGGDNHITRR PRGRPAGSKN
101: KPKPPIIITR DSANALKSHV MEVANGCDVM ESVTVFARRR QRGICVLSGN GAVTNVTIRQ PASVPGGGSS VVNLHGRFEI LSLSGSFLPP PAPPAASGLT
201: IYLAGGQGQV VGGSVVGPLM ASGPVVIMAA SFGNAAYERL PLEEDDQEEQ TAGAVANNID GNATMGGGTQ TQTQTQQQQQ QQLMQDPTSF IQGLPPNLMN
301: SVQLPAEAYW GTPRPSF

Arabidopsis Description

AHL22AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VXD2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.