Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g060500.1.1 | Tomato | nucleus | 59.27 | 81.36 |
| PGSC0003DMT400045315 | Potato | nucleus | 58.94 | 80.54 |
| KRH57320 | Soybean | nucleus | 75.17 | 80.21 |
| KRH04051 | Soybean | nucleus | 74.83 | 78.75 |
| Solyc08g079720.2.1 | Tomato | nucleus | 75.83 | 78.42 |
| VIT_15s0048g00780.t01 | Wine grape | nucleus | 77.81 | 78.33 |
| KRH28008 | Soybean | nucleus | 77.15 | 78.19 |
| KRH77431 | Soybean | nucleus | 77.48 | 78.0 |
| PGSC0003DMT400010004 | Potato | nucleus | 74.83 | 77.13 |
| PGSC0003DMT400032509 | Potato | nucleus | 73.84 | 71.7 |
| Solyc08g007560.1.1 | Tomato | nucleus | 74.5 | 70.53 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 60.6 | 59.22 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 60.6 | 59.22 |
| TraesCS6A01G176200.1 | Wheat | nucleus | 60.26 | 58.9 |
| TraesCS6D01G167600.1 | Wheat | nucleus | 60.26 | 58.9 |
| TraesCS6B01G209300.1 | Wheat | nucleus | 60.26 | 58.9 |
| Zm00001d016132_P001 | Maize | nucleus | 59.93 | 58.58 |
| Os02t0448000-00 | Rice | nucleus | 60.6 | 57.91 |
| EES04848 | Sorghum | nucleus | 61.59 | 56.88 |
| Zm00001d053429_P001 | Maize | nucleus | 59.93 | 56.56 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 48.68 | 56.54 |
| VIT_02s0012g00880.t01 | Wine grape | cytosol | 51.32 | 54.96 |
| VIT_14s0081g00670.t01 | Wine grape | mitochondrion | 51.66 | 53.61 |
| VIT_12s0028g00070.t01 | Wine grape | cytoskeleton, cytosol, plastid | 47.02 | 52.99 |
| VIT_03s0038g04110.t01 | Wine grape | nucleus | 48.01 | 50.17 |
| VIT_15s0045g01130.t01 | Wine grape | cytosol, plastid | 39.74 | 48.78 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 45.36 | 43.35 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 46.03 | 42.51 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 32.45 | 40.0 |
Protein Annotations
| EntrezGene:100265031 | wikigene:100265031 | Gene3D:3.30.1330.80 | MapMan:35.1 | InterPro:AT-hook_nuclear | ProteinID:CCB58434 |
| ProteinID:CCB58434.1 | UniProt:F6HUL1 | EMBL:FN596251 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 | EntrezGene:LOC100265031 | wikigene:LOC100265031 | PFAM:PF03479 |
| PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF15 | SUPFAM:SSF117856 |
| UniParc:UPI0001982D8A | ArrayExpress:VIT_02s0025g05100 | EnsemblPlantsGene:VIT_02s0025g05100 | EnsemblPlants:VIT_02s0025g05100.t01 | unigene:Vvi.23973 | RefSeq:XP_002281296 |
| RefSeq:XP_002281296.1 | SEG:seg | : | : | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6HUL1]
Coordinates
chr2:-:4563840..4565394
Molecular Weight (calculated)
32022.7 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.538
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPVTAHGHS LPPPFHTRDL HLHHQQQHQF HPQQQNSEDE QSGSSGLNRG QKRDRDDNNE NTNGGSEGNE MVGLSGDGEI SRRPRGRPAG SKNKPKPPII
101: ITRDSANALR THVMEIADGC DIVESVATFA RRRQRGVCIM SGTGTVTNVT LRQPASPGAI VTLHGRFEIL SLSGSFLPPP APPAATGLTI YLAGGQGQVV
201: GGSVVGQLLA SGPVVIMAAS FSNAAYERLP LEEEDPALPM PGGSLGSPGG VGQHQPPQQQ PQQPQQLLAD PNAPLFHGLP PNLLNSIQLP AEAYWATGRP
301: PY
101: ITRDSANALR THVMEIADGC DIVESVATFA RRRQRGVCIM SGTGTVTNVT LRQPASPGAI VTLHGRFEIL SLSGSFLPPP APPAATGLTI YLAGGQGQVV
201: GGSVVGQLLA SGPVVIMAAS FSNAAYERLP LEEEDPALPM PGGSLGSPGG VGQHQPPQQQ PQQPQQLLAD PNAPLFHGLP PNLLNSIQLP AEAYWATGRP
301: PY
001: MDPVQSHGSQ SSLPPPFHAR DFQLHLQQQQ QEFFLHHHQQ QRNQTDGDQQ GGSGGNRQIK MDREETSDNI DNIANNSGSE GKDIDIHGGS GEGGGGSGGD
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
101: HQMTRRPRGR PAGSKNKPKP PIIITRDSAN ALRTHVMEIG DGCDLVESVA TFARRRQRGV CVMSGTGNVT NVTIRQPGSH PSPGSVVSLH GRFEILSLSG
201: SFLPPPAPPT ATGLSVYLAG GQGQVVGGSV VGPLLCAGPV VVMAASFSNA AYERLPLEED EMQTPVHGGG GGGSLESPPM MGQQLQHQQQ AMSGHQGLPP
301: NLLGSVQLQQ QHDQSYWSTG RPPY
Arabidopsis Description
AHL24AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178V625]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.