Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH62181 | Soybean | nucleus | 62.45 | 54.64 |
| KRH52892 | Soybean | nucleus | 62.86 | 54.23 |
| KRH72453 | Soybean | nucleus | 57.96 | 52.4 |
| CDX83182 | Canola | cytosol | 50.2 | 50.2 |
| CDY21451 | Canola | cytosol | 50.2 | 50.2 |
| PGSC0003DMT400024250 | Potato | cytosol, plastid | 54.69 | 49.81 |
| KRH16838 | Soybean | nucleus | 50.61 | 48.44 |
| Solyc04g076220.2.1 | Tomato | nucleus | 65.31 | 47.62 |
| Bra000593.1-P | Field mustard | cytosol | 50.2 | 46.77 |
| AT5G49700.1 | Thale cress | nucleus | 51.84 | 46.01 |
| Solyc12g087950.1.1 | Tomato | nucleus | 48.16 | 44.36 |
| PGSC0003DMT400005182 | Potato | nucleus | 48.16 | 44.03 |
| AT1G14490.2 | Thale cress | plastid | 39.59 | 43.11 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 32.65 | 43.01 |
| Bra026211.1-P | Field mustard | plastid | 35.92 | 42.93 |
| CDY45266 | Canola | plastid | 35.51 | 42.44 |
| GSMUA_Achr10P... | Banana | nucleus | 46.53 | 40.86 |
| Os09t0464300-00 | Rice | nucleus | 48.57 | 35.63 |
| CDY65376 | Canola | nucleus | 39.59 | 35.27 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 29.39 | 35.12 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 46.53 | 33.93 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 46.12 | 33.73 |
| VIT_05s0049g00100.t01 | Wine grape | cytosol | 35.51 | 33.46 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.71 | 33.43 |
| Zm00001d020768_P001 | Maize | cytosol | 44.9 | 33.03 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 45.71 | 32.94 |
| VIT_02s0025g05100.t01 | Wine grape | nucleus | 40.0 | 32.45 |
| VIT_02s0012g00880.t01 | Wine grape | cytosol | 36.73 | 31.91 |
| Zm00001d005923_P001 | Maize | nucleus | 44.49 | 31.69 |
| VIT_15s0048g00780.t01 | Wine grape | nucleus | 37.96 | 31.0 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 28.57 | 30.84 |
| OQU89633 | Sorghum | cytosol | 44.49 | 30.79 |
| VIT_14s0081g00670.t01 | Wine grape | mitochondrion | 36.33 | 30.58 |
| Os08t0478466-01 | Rice | nucleus | 39.59 | 29.94 |
| VIT_03s0038g04110.t01 | Wine grape | nucleus | 34.69 | 29.41 |
| VIT_12s0028g00070.t01 | Wine grape | cytoskeleton, cytosol, plastid | 31.84 | 29.1 |
| KXG25333 | Sorghum | cytosol | 39.18 | 28.83 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 34.29 | 28.57 |
| VIT_15s0045g01130.t01 | Wine grape | cytosol, plastid | 27.35 | 27.24 |
| VIT_18s0122g00590.t01 | Wine grape | endoplasmic reticulum, plasma membrane | 34.69 | 26.9 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 35.1 | 26.3 |
Protein Annotations
| EntrezGene:100255831 | wikigene:100255831 | Gene3D:3.30.1330.80 | MapMan:35.1 | EMBL:AM442522 | InterPro:AT-hook_nuclear |
| ProteinID:CAN74013 | ProteinID:CAN74013.1 | ProteinID:CCB45645 | ProteinID:CCB45645.1 | UniProt:F6H123 | EMBL:FN595227 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005175 |
| EntrezGene:LOC100255831 | wikigene:LOC100255831 | PFAM:PF03479 | PIRSF:PIRSF016021 | InterPro:PPC_dom | PFscan:PS51742 |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF1 | SUPFAM:SSF117856 | UniParc:UPI0002108C9D | ArrayExpress:VIT_18s0001g07380 | EnsemblPlantsGene:VIT_18s0001g07380 |
| EnsemblPlants:VIT_18s0001g07380.t01 | RefSeq:XP_002285689 | RefSeq:XP_002285689.1 | SEG:seg | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6H123]
Coordinates
chr18:-:5652118..5653470
Molecular Weight (calculated)
26221.9 Da
IEP (calculated)
9.274
GRAVY (calculated)
-0.585
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGEYVDGKN ESNNMFAKLH QPHNFQQPLH PHHHHHLQQQ QQPHHQHHFQ ISRECQTSEE DDSRSSGGAT AVAAAGATTP TPTKPKSGDG DGATIEVVRR
101: PRGRPPGSKN KPKPPVIITR DTEPAMSPYV LEVPGGVDIV EAIARFSRRR NIGLCVLNGS GTVANVTLRQ PSTTPGATVT FHGRFDILSI SATIIPQSAS
201: SPIPSSANGF TISLAGPQGQ IVGGCHLPSD VIWAPTARQP PPPPY
101: PRGRPPGSKN KPKPPVIITR DTEPAMSPYV LEVPGGVDIV EAIARFSRRR NIGLCVLNGS GTVANVTLRQ PSTTPGATVT FHGRFDILSI SATIIPQSAS
201: SPIPSSANGF TISLAGPQGQ IVGGCHLPSD VIWAPTARQP PPPPY
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Arabidopsis Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.