Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G252500.1 | Wheat | cytosol | 96.47 | 97.91 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 96.18 | 97.32 |
| Os09t0464300-00 | Rice | nucleus | 76.76 | 78.14 |
| Zm00001d005923_P001 | Maize | nucleus | 70.0 | 69.19 |
| Zm00001d020768_P001 | Maize | cytosol | 67.06 | 68.47 |
| OQU89633 | Sorghum | cytosol | 69.71 | 66.95 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 34.41 | 62.9 |
| GSMUA_Achr10P... | Banana | nucleus | 47.35 | 57.71 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 34.71 | 57.56 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.29 | 51.04 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 33.24 | 49.78 |
| KRH62181 | Soybean | nucleus | 38.53 | 46.79 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 32.94 | 45.71 |
| KRH52892 | Soybean | nucleus | 37.94 | 45.42 |
| KRH72453 | Soybean | nucleus | 35.59 | 44.65 |
| PGSC0003DMT400024250 | Potato | cytosol, plastid | 35.29 | 44.61 |
| KRH16838 | Soybean | nucleus | 32.94 | 43.75 |
| CDY21451 | Canola | cytosol | 31.47 | 43.67 |
| CDX83182 | Canola | cytosol | 31.47 | 43.67 |
| Bra000593.1-P | Field mustard | cytosol | 33.53 | 43.35 |
| CDY45266 | Canola | plastid | 25.0 | 41.46 |
| Bra026211.1-P | Field mustard | plastid | 25.0 | 41.46 |
| AT5G49700.1 | Thale cress | nucleus | 33.53 | 41.3 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 30.59 | 40.62 |
| AT1G14490.2 | Thale cress | plastid | 26.76 | 40.44 |
| Solyc04g076220.2.1 | Tomato | nucleus | 38.24 | 38.69 |
| PGSC0003DMT400005182 | Potato | nucleus | 30.0 | 38.06 |
| Solyc12g087950.1.1 | Tomato | nucleus | 29.41 | 37.59 |
| TraesCS6A01G053800.1 | Wheat | nucleus | 30.88 | 37.23 |
| TraesCS3A01G167300.1 | Wheat | plastid | 22.35 | 35.68 |
| TraesCS4A01G312400.1 | Wheat | nucleus | 29.71 | 35.44 |
| TraesCS7A01G299100.1 | Wheat | cytosol, nucleus, plastid | 28.82 | 34.51 |
| CDY65376 | Canola | nucleus | 27.65 | 34.18 |
| TraesCS6A01G399200.1 | Wheat | cytosol, extracellular, peroxisome | 29.12 | 34.14 |
| TraesCS1A01G043100.1 | Wheat | mitochondrion, nucleus | 30.29 | 31.79 |
| TraesCS2A01G449300.1 | Wheat | cytosol, nucleus, peroxisome | 29.41 | 31.75 |
| TraesCS3A01G490800.1 | Wheat | cytosol | 25.88 | 31.21 |
| TraesCS6A01G176200.1 | Wheat | nucleus | 28.24 | 31.07 |
| TraesCS7A01G395400.1 | Wheat | cytosol | 24.71 | 29.07 |
| TraesCS6A01G277700.1 | Wheat | plastid | 27.35 | 28.44 |
| TraesCS7A01G225700.1 | Wheat | nucleus | 26.76 | 28.17 |
| TraesCS7A01G076500.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 28.53 | 28.03 |
| TraesCS4A01G374700.1 | Wheat | nucleus | 28.53 | 27.56 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G245800.1 | EnsemblPlantsGene:TraesCS5A01G245800 | Gene3D:3.30.1330.80 | InterPro:AT-hook_nuclear | InterPro:IPR005175 | InterPro:PPC_dom |
| PANTHER:PTHR31100 | PANTHER:PTHR31100:SF41 | PFAM:PF03479 | PFscan:PS51742 | PIRSF:PIRSF016021 | SEG:seg |
| SUPFAM:SSF117856 | TIGR:cd11378 | TMHMM:TMhelix | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5A:-:459000911..459001933
Molecular Weight (calculated)
35473.3 Da
IEP (calculated)
8.175
GRAVY (calculated)
-0.321
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFGKADMSK EGMYQERKDA PATRFATPPP MHHRHAGHGD QQQQQLECFS DEVDSRGTAE MKEPGGSAAG SQLVSGGGVG DGSSIEVAKK RRGRPPGSKN
101: KPKPPVVITR EAEPAAAMRP HVIEIPGGRD VAEALARFAS RRNLGICVLA GTGAVGNVSL RHPCPTAPGA APAVVVFQGR FEILSISATF LPPAMAAVAP
201: QAAAVAAGLS ISLAGPHGQI VGGAVVGPLY AATTIVVVAA AFTNPTFHRL PADDDAPMPV SVSLCGSADA DEHRARQHQP EPQEQRHQRR QAPHLTPSAA
301: QPVEPCGVPV YACQPQPQEV MWPLAARAPH QPPPPPPPPY
101: KPKPPVVITR EAEPAAAMRP HVIEIPGGRD VAEALARFAS RRNLGICVLA GTGAVGNVSL RHPCPTAPGA APAVVVFQGR FEILSISATF LPPAMAAVAP
201: QAAAVAAGLS ISLAGPHGQI VGGAVVGPLY AATTIVVVAA AFTNPTFHRL PADDDAPMPV SVSLCGSADA DEHRARQHQP EPQEQRHQRR QAPHLTPSAA
301: QPVEPCGVPV YACQPQPQEV MWPLAARAPH QPPPPPPPPY
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Arabidopsis Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.