CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52892	Soybean	nucleus	96.07	94.72
KRH72453	Soybean	nucleus	66.07	68.27
CDX83182	Canola	cytosol	58.21	66.53
CDY21451	Canola	cytosol	58.21	66.53
Bra000593.1-P	Field mustard	cytosol	61.43	65.4
VIT_18s0001g07380.t01	Wine grape	nucleus	54.64	62.45
AT5G49700.1	Thale cress	nucleus	60.71	61.59
KRH16838	Soybean	nucleus	55.71	60.94
PGSC0003DMT400024250	Potato	cytosol, plastid	57.86	60.22
AT1G14490.2	Thale cress	plastid	48.21	60.0
Bra026211.1-P	Field mustard	plastid	42.14	57.56
GSMUA_Achr7P19000_001	Banana	cytosol, plasma membrane, plastid	38.21	57.53
CDY45266	Canola	plastid	41.79	57.07
Solyc04g076220.2.1	Tomato	nucleus	63.21	52.68
Solyc12g087950.1.1	Tomato	nucleus	49.64	52.26
PGSC0003DMT400005182	Potato	nucleus	49.64	51.87
GSMUA_Achr10P...	Banana	nucleus	48.93	49.1
CDY65376	Canola	nucleus	47.5	48.36
GSMUA_Achr8P23410_001	Banana	cytosol	35.36	48.29
KRH28289	Soybean	cytosol	38.57	43.2
KRH77205	Soybean	nucleus	38.21	42.8
KRH15076	Soybean	nucleus	25.71	41.38
Os09t0464300-00	Rice	nucleus	49.29	41.32
KRH00993	Soybean	nucleus	39.29	41.04
KRH04340	Soybean	cytosol	36.79	41.04
GSMUA_Achr3P06770_001	Banana	cytosol	33.21	40.97
KRH40225	Soybean	nucleus	39.29	40.74
KRG90376	Soybean	nucleus	38.57	40.3
KRH31728	Soybean	cytosol	38.57	40.0
KRH73062	Soybean	cytosol	32.5	39.74
GSMUA_AchrUn_...	Banana	nucleus	47.5	39.7
TraesCS5D01G252500.1	Wheat	cytosol	47.14	39.4
TraesCS5B01G243200.1	Wheat	cytosol, endoplasmic reticulum, nucleus	47.14	39.29
KRH51551	Soybean	plastid	28.21	38.73
TraesCS5A01G245800.1	Wheat	cytosol, endoplasmic reticulum, nucleus	46.79	38.53
Zm00001d020768_P001	Maize	cytosol	45.71	38.44
KRH58197	Soybean	cytosol	36.79	37.32
KRH57320	Soybean	nucleus	37.5	37.1
KRH31005	Soybean	nucleus	38.21	37.02
Zm00001d005923_P001	Maize	nucleus	45.36	36.92
KRH04051	Soybean	nucleus	37.5	36.59
KRH76289	Soybean	nucleus	37.5	36.46
KRH34516	Soybean	cytosol, nucleus, peroxisome	37.5	36.21
KRH34163	Soybean	nucleus	36.07	36.07
KRH14482	Soybean	cytosol, mitochondrion, peroxisome	31.79	35.74
KRG92616	Soybean	nucleus	35.0	35.38
OQU89633	Sorghum	cytosol	44.64	35.31
KRG92293	Soybean	cytosol, mitochondrion, nucleus	37.86	34.98
KRG97871	Soybean	nucleus	37.5	34.77
KRH73632	Soybean	cytosol, endoplasmic reticulum, peroxisome	30.71	34.68
Os08t0478466-01	Rice	nucleus	40.0	34.57
KRH28008	Soybean	nucleus	36.79	34.56
KRH77431	Soybean	nucleus	36.07	33.67
KRH65251	Soybean	nucleus	36.79	33.23
KXG25333	Sorghum	cytosol	39.29	33.03
Zm00001d031826_P001	Maize	cytosol, endoplasmic reticulum, nucleus	33.93	32.31

Protein Annotations

EntrezGene:100788098	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:ACUP02002226	InterPro:AT-hook_nuclear	EnsemblPlantsGene:GLYMA_04G091600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	UniProt:I1JV30	InterPro:IPR005175	EnsemblPlants:KRH62181	ProteinID:KRH62181	ProteinID:KRH62181.1
PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF1
SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI00023397DF	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:8052537..8054787

Molecular Weight (calculated)

29128.3 Da

IEP (calculated)

7.117

GRAVY (calculated)

-0.370

Length

280 amino acids

Sequence
(BLAST)

001: MKGEYVEQQQ QHPKSETPPS MFSKLQPQHH PFPHHPFQLS AEDATTITPS TAQKANSSGG DGATIEVVRR PRGRPPGSKN KPKPPVIITR DPEPAMSPYI
101: LEVSGGNDVV EAIAQFSHRK NMGICVLTGS GTVANVTLRQ PSTTPGTTVT FHGRFDILSV SATFLPQQSG ASPAVPNGFA ISLAGPQGQI VGGLVAGGLM
201: AAGTVFVIAA SFNNPAYHRL PPEEEGASAG DGHSPPVSGG GDSGHGQAES CGMSMYSCHL PSDVIWAPTA RPPPPPPPPY

Best Arabidopsis Sequence Match ( AT5G49700.1 )
(BLAST)

001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY

Arabidopsis Description

AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.