Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97871 | Soybean | nucleus | 96.54 | 92.38 |
| KRH73062 | Soybean | cytosol | 58.13 | 73.36 |
| KRH15076 | Soybean | nucleus | 42.56 | 70.69 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 71.63 | 63.3 |
| GSMUA_Achr5P28720_001 | Banana | mitochondrion, peroxisome, plastid | 54.33 | 59.92 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 51.21 | 57.81 |
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 50.87 | 57.42 |
| TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 50.87 | 57.42 |
| HORVU4Hr1G060280.1 | Barley | cytosol, nucleus, plastid | 50.52 | 57.03 |
| Os03t0270000-01 | Rice | nucleus | 50.17 | 56.2 |
| KRH31728 | Soybean | cytosol | 52.25 | 55.93 |
| GSMUA_Achr11P... | Banana | nucleus | 55.71 | 54.76 |
| KRG90376 | Soybean | nucleus | 49.83 | 53.73 |
| EER95114 | Sorghum | nucleus | 50.17 | 53.31 |
| GSMUA_Achr7P10630_001 | Banana | plastid | 53.63 | 53.26 |
| KRH34516 | Soybean | cytosol, nucleus, peroxisome | 52.94 | 52.76 |
| Zm00001d028577_P001 | Maize | nucleus | 49.48 | 52.38 |
| KRH34163 | Soybean | nucleus | 50.52 | 52.14 |
| CDY60321 | Canola | plastid | 53.29 | 52.03 |
| KRG92616 | Soybean | nucleus | 49.83 | 51.99 |
| GSMUA_Achr6P01060_001 | Banana | nucleus | 50.17 | 51.79 |
| CDY53687 | Canola | nucleus | 53.29 | 51.68 |
| Bra003217.1-P | Field mustard | nucleus | 53.29 | 51.68 |
| PGSC0003DMT400069792 | Potato | cytosol, nucleus, plastid | 56.06 | 51.59 |
| AT3G55560.1 | Thale cress | plastid | 55.02 | 51.29 |
| CDY68242 | Canola | plastid | 52.6 | 51.18 |
| Bra007176.1-P | Field mustard | plastid | 52.25 | 50.84 |
| CDY41211 | Canola | plastid | 51.56 | 50.51 |
| KRH51551 | Soybean | plastid | 35.64 | 50.49 |
| CDY02949 | Canola | plastid | 53.63 | 50.49 |
| CDX76085 | Canola | plastid | 53.63 | 50.49 |
| Bra014735.1-P | Field mustard | plastid | 53.63 | 50.49 |
| KRH77205 | Soybean | nucleus | 43.6 | 50.4 |
| KRG92293 | Soybean | cytosol, mitochondrion, nucleus | 52.25 | 49.84 |
| KRH28289 | Soybean | cytosol | 42.56 | 49.2 |
| Solyc05g053000.1.1 | Tomato | nucleus | 52.6 | 48.56 |
| KRH00993 | Soybean | nucleus | 44.98 | 48.51 |
| GSMUA_Achr6P04980_001 | Banana | cytosol, nucleus, plastid | 47.75 | 48.08 |
| KRH04340 | Soybean | cytosol | 41.18 | 47.41 |
| KRH40225 | Soybean | nucleus | 44.29 | 47.41 |
| KRH76289 | Soybean | nucleus | 46.71 | 46.88 |
| GSMUA_Achr9P28280_001 | Banana | plastid | 48.44 | 46.67 |
| KRH58197 | Soybean | cytosol | 44.29 | 46.38 |
| KRH57320 | Soybean | nucleus | 44.64 | 45.58 |
| KRH14482 | Soybean | cytosol, mitochondrion, peroxisome | 39.1 | 45.38 |
| KRH04051 | Soybean | nucleus | 44.64 | 44.95 |
| KRH73632 | Soybean | cytosol, endoplasmic reticulum, peroxisome | 38.06 | 44.35 |
| KRH65251 | Soybean | nucleus | 46.02 | 42.9 |
| GSMUA_Achr7P15000_001 | Banana | nucleus | 41.18 | 42.65 |
| KRH28008 | Soybean | nucleus | 43.6 | 42.28 |
| KRH77431 | Soybean | nucleus | 43.6 | 42.0 |
| KRH16838 | Soybean | nucleus | 33.91 | 38.28 |
| KRH62181 | Soybean | nucleus | 37.02 | 38.21 |
| KRH52892 | Soybean | nucleus | 37.02 | 37.68 |
| KRH72453 | Soybean | nucleus | 34.95 | 37.27 |
Protein Annotations
| EntrezGene:102667174 | Gene3D:3.30.1330.80 | MapMan:35.1 | EMBL:ACUP02007116 | InterPro:AT-hook_nuclear | EnsemblPlantsGene:GLYMA_11G221200 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | UniProt:I1LMH6 |
| InterPro:IPR005175 | EnsemblPlants:KRH31005 | ProteinID:KRH31005 | ProteinID:KRH31005.1 | PFAM:PF03479 | PIRSF:PIRSF016021 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF13 | SUPFAM:SSF117856 | UniParc:UPI000233D139 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr11:-:31641566..31645035
Molecular Weight (calculated)
30637.7 Da
IEP (calculated)
5.947
GRAVY (calculated)
-0.597
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MANRWWTGNV GMIREQELME NSNNNNATTT PTNSSNSNTN ANTNTTEEEV SRDNGEDLQN QNLGSHEGSE PGSSGRRPRG RPPGSKNKPK PPIVITKESP
101: NALRSHVLEI TSGSDVAESI AAFANRRHRG VSVLSGSGIV ANVTLRQPAA PAGVITLHGR FEILSLSGAF LPSPSPPGAT GLTVYLAGGQ GQVVGGTVAG
201: SLVASGPVMV IAATFANATY ERLPLEDEQG EEGMQVQQQQ QQQQQQQSQG LGEQVSMPMY NLPPNLLHNG QNMPHDVLWG APPRPPPSF
101: NALRSHVLEI TSGSDVAESI AAFANRRHRG VSVLSGSGIV ANVTLRQPAA PAGVITLHGR FEILSLSGAF LPSPSPPGAT GLTVYLAGGQ GQVVGGTVAG
201: SLVASGPVMV IAATFANATY ERLPLEDEQG EEGMQVQQQQ QQQQQQQSQG LGEQVSMPMY NLPPNLLHNG QNMPHDVLWG APPRPPPSF
001: MANPWWVGNV AIGGVESPVT SSAPSLHHRN SNNNNPPTMT RSDPRLDHDF TTNNSGSPNT QTQSQEEQNS RDEQPAVEPG SGSGSTGRRP RGRPPGSKNK
101: PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA
201: GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG
301: GPPPRAPPSY
101: PKSPVVVTKE SPNSLQSHVL EIATGADVAE SLNAFARRRG RGVSVLSGSG LVTNVTLRQP AASGGVVSLR GQFEILSMCG AFLPTSGSPA AAAGLTIYLA
201: GAQGQVVGGG VAGPLIASGP VIVIAATFCN ATYERLPIEE EQQQEQPLQL EDGKKQKEEN DDNESGNNGN EGSMQPPMYN MPPNFIPNGH QMAQHDVYWG
301: GPPPRAPPSY
Arabidopsis Description
AHL15AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:A0A178VH84]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.