Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G210500.1 | Wheat | cytosol, nucleus, plastid | 98.44 | 98.44 |
| TraesCS4B01G209800.1 | Wheat | cytosol, nucleus, plastid | 98.44 | 98.44 |
| TraesCS4A01G094700.1 | Wheat | cytosol, nucleus, plastid | 98.05 | 98.05 |
| Os03t0270000-01 | Rice | nucleus | 85.94 | 85.27 |
| Zm00001d028577_P001 | Maize | nucleus | 87.11 | 81.69 |
| EER95114 | Sorghum | nucleus | 86.33 | 81.25 |
| GSMUA_Achr5P28720_001 | Banana | mitochondrion, peroxisome, plastid | 56.25 | 54.96 |
| KRH73062 | Soybean | cytosol | 48.05 | 53.71 |
| KRH15076 | Soybean | nucleus | 35.55 | 52.3 |
| HORVU7Hr1G020390.1 | Barley | mitochondrion | 38.28 | 51.85 |
| GSMUA_Achr11P... | Banana | nucleus | 58.2 | 50.68 |
| KRH31005 | Soybean | nucleus | 57.03 | 50.52 |
| GSMUA_Achr7P10630_001 | Banana | plastid | 57.03 | 50.17 |
| HORVU4Hr1G015750.1 | Barley | mitochondrion | 53.91 | 49.64 |
| GSMUA_Achr6P01060_001 | Banana | nucleus | 53.52 | 48.93 |
| HORVU1Hr1G008650.1 | Barley | mitochondrion, nucleus, peroxisome | 60.94 | 48.45 |
| KRG97871 | Soybean | nucleus | 56.64 | 48.01 |
| HORVU6Hr1G010470.2 | Barley | cytosol, nucleus, peroxisome | 52.34 | 47.69 |
| HORVU4Hr1G000870.2 | Barley | nucleus | 53.12 | 47.39 |
| GSMUA_Achr6P04980_001 | Banana | cytosol, nucleus, plastid | 52.73 | 47.04 |
| GSMUA_Achr9P28280_001 | Banana | plastid | 53.12 | 45.33 |
| HORVU6Hr1G091740.1 | Barley | cytosol | 50.78 | 44.52 |
| CDY68242 | Canola | plastid | 50.78 | 43.77 |
| GSMUA_Achr7P15000_001 | Banana | nucleus | 47.66 | 43.73 |
| CDY60321 | Canola | plastid | 50.39 | 43.58 |
| AT3G55560.1 | Thale cress | plastid | 52.73 | 43.55 |
| Bra007176.1-P | Field mustard | plastid | 50.39 | 43.43 |
| Bra003217.1-P | Field mustard | nucleus | 50.39 | 43.29 |
| CDY41211 | Canola | plastid | 49.61 | 43.05 |
| CDX76085 | Canola | plastid | 51.56 | 43.0 |
| Bra014735.1-P | Field mustard | plastid | 51.56 | 43.0 |
| CDY53687 | Canola | nucleus | 50.0 | 42.95 |
| PGSC0003DMT400069792 | Potato | cytosol, nucleus, plastid | 52.34 | 42.68 |
| VIT_13s0019g02080.t01 | Wine grape | nucleus | 54.3 | 42.51 |
| HORVU7Hr1G070490.2 | Barley | cytosol, mitochondrion, peroxisome | 47.66 | 42.36 |
| CDY02949 | Canola | plastid | 50.78 | 42.35 |
| Solyc05g053000.1.1 | Tomato | nucleus | 51.56 | 42.17 |
| HORVU6Hr1G037630.1 | Barley | nucleus | 48.44 | 40.13 |
| HORVU6Hr1G037640.1 | Barley | nucleus | 48.44 | 40.13 |
| HORVU3Hr1G033710.2 | Barley | plastid | 32.03 | 38.5 |
| HORVU6Hr1G070090.1 | Barley | plastid | 46.88 | 36.25 |
| HORVU7Hr1G046930.1 | Barley | cytosol, nucleus, peroxisome | 44.53 | 36.08 |
| HORVU7Hr1G017700.2 | Barley | nucleus | 46.88 | 34.38 |
| HORVU7Hr1G093230.2 | Barley | cytosol | 37.89 | 32.01 |
| HORVU0Hr1G011700.1 | Barley | cytosol | 24.61 | 29.17 |
| HORVU3Hr1G108820.1 | Barley | mitochondrion | 27.73 | 27.73 |
Protein Annotations
| Gene3D:3.30.1330.80 | MapMan:35.1 | EMBL:AK364316 | EMBL:AK367679 | InterPro:AT-hook_nuclear | UniProt:F2DK98 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003680 | GO:GO:0003700 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045824 | EnsemblPlantsGene:HORVU4Hr1G060280 | EnsemblPlants:HORVU4Hr1G060280.1 | InterPro:IPR005175 | PFAM:PF03479 | PIRSF:PIRSF016021 |
| InterPro:PPC_dom | PFscan:PS51742 | PANTHER:PTHR31100 | PANTHER:PTHR31100:SF40 | SUPFAM:SSF117856 | UniParc:UPI0002006555 |
| SEG:seg | : | : | : | : | : |
Description
AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F2DK98]
Coordinates
chrchr4H:-:505338976..505340454
Molecular Weight (calculated)
25692.3 Da
IEP (calculated)
6.959
GRAVY (calculated)
-0.178
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSMDGHPLQ GNHGYAHVPA GSNNDEDDSS PPPSAGGVSS GSGRRPRGRP PGSKNKPKPP VVVTRESPNA MRSHVLEIAS GADIVEAIAA FSRRRQRGVS
101: VLSGSGAVTN VTLRQPAGTG AAAVALRGRF EILSLSGAFL PAPAPPGATG LAVYLAGGQG QVVGGSVMGE LLACGPVMVI AATFGNATYE RLPLDQDAEE
201: GAVLSGSEGA ATQLEQQGSG GAAVPPPMYA VPQTPPSDMF GQWGQAAVAR PPPTSF
101: VLSGSGAVTN VTLRQPAGTG AAAVALRGRF EILSLSGAFL PAPAPPGATG LAVYLAGGQG QVVGGSVMGE LLACGPVMVI AATFGNATYE RLPLDQDAEE
201: GAVLSGSEGA ATQLEQQGSG GAAVPPPMYA VPQTPPSDMF GQWGQAAVAR PPPTSF
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
Arabidopsis Description
AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.