Factsheet for VIT_13s0019g02080.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31005	Soybean	nucleus	63.3	71.63
KRH15076	Soybean	nucleus	37.31	70.11
KRH73062	Soybean	cytosol	48.32	69.0
KRG97871	Soybean	nucleus	63.61	68.87
GSMUA_Achr5P28720_001	Banana	mitochondrion, peroxisome, plastid	49.54	61.83
VIT_05s0049g00100.t01	Wine grape	cytosol	47.71	60.0
GSMUA_Achr11P...	Banana	nucleus	51.38	57.14
VIT_14s0081g00670.t01	Wine grape	mitochondrion	50.46	56.7
GSMUA_Achr7P10630_001	Banana	plastid	50.15	56.36
TraesCS4A01G094700.1	Wheat	cytosol, nucleus, plastid	43.12	55.08
TraesCS4D01G210500.1	Wheat	cytosol, nucleus, plastid	42.81	54.69
TraesCS4B01G209800.1	Wheat	cytosol, nucleus, plastid	42.81	54.69
CDY60321	Canola	plastid	49.24	54.39
CDY53687	Canola	nucleus	49.54	54.36
HORVU4Hr1G060280.1	Barley	cytosol, nucleus, plastid	42.51	54.3
Os03t0270000-01	Rice	nucleus	42.81	54.26
Bra003217.1-P	Field mustard	nucleus	49.24	54.03
AT3G55560.1	Thale cress	plastid	50.76	53.55
CDY68242	Canola	plastid	48.32	53.2
CDY41211	Canola	plastid	47.71	52.88
Bra007176.1-P	Field mustard	plastid	48.01	52.86
Bra014735.1-P	Field mustard	plastid	49.24	52.44
CDX76085	Canola	plastid	49.24	52.44
CDY02949	Canola	plastid	48.93	52.12
EER95114	Sorghum	nucleus	42.51	51.1
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	48.93	50.96
Zm00001d028577_P001	Maize	nucleus	42.2	50.55
GSMUA_Achr6P04980_001	Banana	cytosol, nucleus, plastid	44.34	50.52
GSMUA_Achr6P01060_001	Banana	nucleus	43.12	50.36
Solyc05g053000.1.1	Tomato	nucleus	47.4	49.52
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	37.0	49.19
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	40.06	48.88
GSMUA_Achr9P28280_001	Banana	plastid	44.34	48.33
VIT_03s0038g04110.t01	Wine grape	nucleus	42.2	47.75
GSMUA_Achr7P15000_001	Banana	nucleus	40.06	46.95
VIT_15s0048g00780.t01	Wine grape	nucleus	42.81	46.67
VIT_02s0025g05100.t01	Wine grape	nucleus	42.51	46.03
VIT_02s0012g00880.t01	Wine grape	cytosol	39.45	45.74
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	36.7	37.97
VIT_18s0001g07380.t01	Wine grape	nucleus	26.3	35.1

Protein Annotations

EntrezGene:100261537	wikigene:100261537	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	ProteinID:CCB56320
ProteinID:CCB56320.1	UniProt:F6HNV0	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	EntrezGene:LOC100261537	wikigene:LOC100261537	PFAM:PF03479
PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF13	SUPFAM:SSF117856
UniParc:UPI000198487E	ArrayExpress:VIT_13s0019g02080	EnsemblPlantsGene:VIT_13s0019g02080	EnsemblPlants:VIT_13s0019g02080.t01	RefSeq:XP_002277930	RefSeq:XP_002277930.1
RefSeq:XP_019079540.1	SEG:seg	:	:	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6HNV0]

Coordinates

chr13:-:3394297..3395402

Molecular Weight (calculated)

34405.0 Da

IEP (calculated)

5.607

GRAVY (calculated)

-0.555

Length

327 amino acids

Sequence
(BLAST)

001: MTHRWWAGNV AMRDPMSSAP SLHLRNTEDD QGGLNRLGPR REQEFMDNNN NNTTTTTNTT ATNSSSSNTN PNPSAANQNP EEEDSREIDL EDSEQNAGGH
101: EIAEPSSAGR RPRGRPPGSK NKPKPPIVIT KESPNALRSH VLEISSGSDI AESIANFAQR RHRGVSVLSA SGIVNNVTLR QPAAPGGVIT LQGRFEILSL
201: SGAFLPAPSP PGATGLTVYL AGGQGQVVGG SVVGALMASG PVIVIAATFS NATFERLPLE DEPANEGIQM PQTSGVNSGT GGTSAPQSHG LVDPSSMPIY
301: NLPPNLLPNG QMPHDVFWAP PPRPPPY

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.