Factsheet for VIT_14s0081g00670.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006090.1.1	Tomato	nucleus	70.1	80.0
PGSC0003DMT400073795	Potato	nucleus	81.44	79.8
VIT_05s0049g00100.t01	Wine grape	cytosol	68.38	76.54
KRG92616	Soybean	nucleus	68.73	72.2
KRH34163	Soybean	nucleus	68.04	70.71
AT3G04570.1	Thale cress	cytosol, mitochondrion, peroxisome	65.64	60.63
CDY64701	Canola	nucleus	64.26	60.13
CDY21124	Canola	cytosol, endoplasmic reticulum, peroxisome	59.11	59.72
CDY30003	Canola	cytosol, nucleus, peroxisome, plastid	58.76	59.17
Bra040184.1-P	Field mustard	cytosol, nucleus, peroxisome	63.57	58.92
CDY49327	Canola	cytosol, endoplasmic reticulum, nucleus	63.57	58.92
Bra040135.1-P	Field mustard	cytosol, nucleus, peroxisome	56.36	55.59
VIT_02s0025g05100.t01	Wine grape	nucleus	53.61	51.66
VIT_15s0048g00780.t01	Wine grape	nucleus	52.92	51.33
VIT_13s0019g02080.t01	Wine grape	nucleus	56.7	50.46
VIT_02s0012g00880.t01	Wine grape	cytosol	48.11	49.65
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	44.67	48.51
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	40.89	48.37
VIT_03s0038g04110.t01	Wine grape	nucleus	47.42	47.75
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	42.61	39.24
VIT_18s0001g07380.t01	Wine grape	nucleus	30.58	36.33

Protein Annotations

EntrezGene:100244453	wikigene:100244453	Gene3D:3.30.1330.80	MapMan:35.1	EMBL:AM463589	InterPro:AT-hook_nuclear
ProteinID:CAN61523	ProteinID:CAN61523.1	ProteinID:CCB58693	ProteinID:CCB58693.1	UniProt:F6HVI0	EMBL:FN596256
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009987	GO:GO:0045824	GO:GO:0050832	InterPro:IPR005175	EntrezGene:LOC100244453
wikigene:LOC100244453	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742	PANTHER:PTHR31100
PANTHER:PTHR31100:SF8	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI00015CD250	ArrayExpress:VIT_14s0081g00670	EnsemblPlantsGene:VIT_14s0081g00670
EnsemblPlants:VIT_14s0081g00670.t01	unigene:Vvi.23590	RefSeq:XP_002271606	RefSeq:XP_002271606.1	SEG:seg	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6HVI0]

Coordinates

chr14:-:9003994..9005457

Molecular Weight (calculated)

29703.9 Da

IEP (calculated)

5.361

GRAVY (calculated)

-0.387

Length

291 amino acids

Sequence
(BLAST)

001: MANRWWAGQV GLQGVDTSSA SPAMKKPDLG ISMNENGGSG SGGGGEEEEE KENSDEPREG AIEVATRRPR GRPPGSKNKP KPPIFVTRDS PNALRSHVME
101: VANGSDITES IAQFARRRQR GVCVLSASGT VMNVTLRQPS APGGAVMALH GRFEILSLTG AFLPGPAPPG STGLTIYLAG GQAQVVGGSV VGSLIAAGPV
201: MVIAATFSNA TYERLPLEDE EEAGSAAQEQ LAGGGGGGGS PPGIGGSGGQ QQAGMADPSS MPVYNLPPNL LPNGGQLNHD AYGWAHGRQP Y

Best Arabidopsis Sequence Match ( AT4G14465.1 )
(BLAST)

001: MANPWWTNQS GLAGMVDHSV SSGHHQNHHH QSLLTKGDLG IAMNQSQDND QDEEDDPREG AVEVVNRRPR GRPPGSKNKP KAPIFVTRDS PNALRSHVLE
101: ISDGSDVADT IAHFSRRRQR GVCVLSGTGS VANVTLRQAA APGGVVSLQG RFEILSLTGA FLPGPSPPGS TGLTVYLAGV QGQVVGGSVV GPLLAIGSVM
201: VIAATFSNAT YERLPMEEEE DGGGSRQIHG GGDSPPRIGS NLPDLSGMAG PGYNMPPHLI PNGAGQLGHE PYTWVHARPP Y

Arabidopsis Description

AHL20AT-hook motif nuclear-localized protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWQ2]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.