Factsheet for VIT_18s0122g00590.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 3
mitochondrion 1
endoplasmic reticulum 3
plastid 1
extracellular 2
vacuole 2
plasma membrane 3
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	45.89	59.18
PGSC0003DMT400025705	Potato	plastid	47.47	57.69
VIT_03s0038g04110.t01	Wine grape	nucleus	51.9	56.75
KRH51551	Soybean	plastid	35.76	55.39
CDY20404	Canola	nucleus	43.67	50.92
CDX87591	Canola	nucleus	44.3	50.0
CDY45983	Canola	nucleus	45.25	49.65
Bra015738.1-P	Field mustard	nucleus	44.94	49.31
AT1G20900.1	Thale cress	nucleus	48.42	49.2
CDX96613	Canola	nucleus	46.84	49.17
Bra008262.1-P	Field mustard	nucleus	44.62	49.13
Bra003717.1-P	Field mustard	nucleus	44.3	48.78
GSMUA_Achr9P12320_001	Banana	plastid	43.35	48.75
Zm00001d051620_P001	Maize	plastid	48.73	48.58
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	42.41	48.55
Bra012256.1-P	Field mustard	nucleus	47.47	48.54
VIT_05s0049g00100.t01	Wine grape	cytosol	39.87	48.46
Bra016444.1-P	Field mustard	nucleus	48.1	48.25
Zm00001d017825_P001	Maize	plastid	49.37	48.15
CDY31511	Canola	nucleus	40.82	47.96
CDX85952	Canola	cytosol	41.14	47.79
CDX68095	Canola	cytosol	40.82	47.78
AT1G76500.1	Thale cress	nucleus	45.57	47.68
CDY29494	Canola	nucleus	40.82	47.08
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	48.73	46.95
CDY33658	Canola	nucleus	43.35	46.92
CDY01347	Canola	nucleus	40.19	46.69
CDY31858	Canola	nucleus	40.19	46.52
VIT_02s0012g00880.t01	Wine grape	cytosol	41.46	46.45
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	48.73	45.83
Bra025854.1-P	Field mustard	nucleus	41.14	45.45
VIT_02s0025g05100.t01	Wine grape	nucleus	43.35	45.36
VIT_15s0048g00780.t01	Wine grape	nucleus	42.72	45.0
VIT_12s0028g00070.t01	Wine grape	cytoskeleton, cytosol, plastid	37.97	44.78
HORVU6Hr1G070090.1	Barley	plastid	46.84	44.71
TraesCS6D01G258400.1	Wheat	plastid	46.52	44.68
TraesCS6B01G306100.1	Wheat	plastid	46.2	44.38
TraesCS6A01G277700.1	Wheat	plastid	45.89	44.34
TraesCS7D01G228800.1	Wheat	nucleus	43.99	43.71
KXG19929	Sorghum	nucleus	43.99	43.71
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	33.86	43.5
Zm00001d045928_P001	Maize	nucleus	42.09	43.46
Os06t0326900-01	Rice	nucleus	43.99	43.17
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	43.04	43.04
VIT_14s0081g00670.t01	Wine grape	mitochondrion	39.24	42.61
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	36.39	42.44
TraesCS7A01G225700.1	Wheat	nucleus	43.35	42.41
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	42.72	41.93
EER88668	Sorghum	cytosol	34.81	40.74
TraesCS7B01G297300.1	Wheat	cytosol	37.03	40.07
TraesCS7A01G395400.1	Wheat	cytosol	36.08	39.45
VIT_13s0019g02080.t01	Wine grape	nucleus	37.97	36.7
HORVU7Hr1G093230.2	Barley	cytosol	34.81	36.3
VIT_18s0001g07380.t01	Wine grape	nucleus	26.9	34.69

Protein Annotations

Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	ProteinID:CCB62680	ProteinID:CCB62680.1	UniProt:F6I6W2
EMBL:FN596759	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003680	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR005175	PFAM:PF03479	PIRSF:PIRSF016021	InterPro:PPC_dom
PFscan:PS51742	PANTHER:PTHR31100	PANTHER:PTHR31100:SF5	SUPFAM:SSF117856	TMHMM:TMhelix	UniParc:UPI000210ABA8
ArrayExpress:VIT_18s0122g00590	EnsemblPlantsGene:VIT_18s0122g00590	EnsemblPlants:VIT_18s0122g00590.t01	SEG:seg	:	:

Description

AT-hook motif nuclear-localized protein [Source:UniProtKB/TrEMBL;Acc:F6I6W2]

Coordinates

chr18:-:474843..476501

Molecular Weight (calculated)

34294.9 Da

IEP (calculated)

6.964

GRAVY (calculated)

-0.251

Length

316 amino acids

Sequence
(BLAST)

001: MKLYTRALHY EVIQLNANDH CLGYSLLFIF WFWGVWIVLR DQIEAEGEEG KRKLANNWWE RVDVGMEGYE PGSGSRYVHQ LLGPELHLQR PSSLPQHQAT
101: QQPSDSRDES PDDQEQRADT EEAAAASSGG ATTSSNRRPR GRPPGSKNKP KPPIIVTRDS PNALRSHVLE VAAGADVMES VLNYARRRGR GVCVLSGGGT
201: VMNVTLRQPA SPAGSIVTLH GRFEILSLSG TVLPPPAPPS AGGLSIFLSG GQGQVVGGSV VGPLMASGPV VLMAASFANA VFERLPLEEE EGLKWKEPRV
301: YLIMHVFPSL LQSAFL

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.