Factsheet for PGSC0003DMT400025705

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g082810.2.1	Tomato	cytosol, nucleus, peroxisome	87.69	93.06
KRH51551	Soybean	plastid	49.62	63.24
PGSC0003DMT400045315	Potato	nucleus	46.92	55.2
CDY20404	Canola	nucleus	55.77	53.51
CDY45983	Canola	nucleus	57.69	52.08
Bra008262.1-P	Field mustard	nucleus	56.92	51.57
CDX96613	Canola	nucleus	59.62	51.49
AT1G20900.1	Thale cress	nucleus	60.77	50.8
CDX87591	Canola	nucleus	54.62	50.71
Bra012256.1-P	Field mustard	nucleus	59.23	49.84
CDX88286	Canola	cytosol, endoplasmic reticulum, nucleus	52.69	49.64
Bra003717.1-P	Field mustard	nucleus	54.62	49.48
GSMUA_Achr9P12320_001	Banana	plastid	53.46	49.47
CDY33658	Canola	nucleus	55.38	49.32
Bra015738.1-P	Field mustard	nucleus	54.62	49.31
Bra016444.1-P	Field mustard	nucleus	59.62	49.21
AT1G76500.1	Thale cress	nucleus	56.92	49.01
CDX68095	Canola	cytosol	50.38	48.52
CDY31858	Canola	nucleus	50.77	48.35
CDY31511	Canola	nucleus	50.0	48.33
CDY01347	Canola	nucleus	50.38	48.16
Zm00001d017825_P001	Maize	plastid	59.62	47.84
TraesCS6A01G277700.1	Wheat	plastid	60.0	47.71
VIT_18s0122g00590.t01	Wine grape	endoplasmic reticulum, plasma membrane	57.69	47.47
CDX85952	Canola	cytosol	49.62	47.43
Zm00001d051620_P001	Maize	plastid	57.69	47.32
EES05630	Sorghum	cytosol, mitochondrion, nucleus, plastid	59.62	47.26
TraesCS6D01G258400.1	Wheat	plastid	59.62	47.11
TraesCS6B01G306100.1	Wheat	plastid	59.62	47.11
HORVU6Hr1G070090.1	Barley	plastid	59.62	46.83
CDY29494	Canola	nucleus	49.23	46.72
Os02t0713700-01	Rice	cytosol, mitochondrion, nucleus, plastid	60.0	46.43
Zm00001d045928_P001	Maize	nucleus	54.62	46.41
Bra025854.1-P	Field mustard	nucleus	50.38	45.8
KXG19929	Sorghum	nucleus	55.77	45.6
HORVU7Hr1G046930.1	Barley	cytosol, nucleus, peroxisome	54.23	44.62
PGSC0003DMT400010004	Potato	nucleus	50.0	44.37
PGSC0003DMT400033248	Potato	nucleus	52.31	44.16
PGSC0003DMT400002959	Potato	nucleus	45.0	44.15
Os06t0326900-01	Rice	nucleus	54.62	44.1
TraesCS7A01G225700.1	Wheat	nucleus	54.62	43.96
PGSC0003DMT400044573	Potato	cytosol	42.31	43.82
TraesCS7B01G193900.1	Wheat	cytosol, nucleus, peroxisome	53.46	43.17
TraesCS7D01G228800.1	Wheat	nucleus	51.92	42.45
PGSC0003DMT400045203	Potato	nucleus	47.31	42.41
PGSC0003DMT400073795	Potato	nucleus	48.08	42.09
PGSC0003DMT400004515	Potato	nucleus	35.77	41.52
PGSC0003DMT400044451	Potato	nucleus	44.62	40.7
PGSC0003DMT400032509	Potato	nucleus	48.08	40.19
Zm00001d046696_P001	Maize	cytosol, nucleus, peroxisome	40.77	39.11
EER88668	Sorghum	cytosol	39.23	37.78
PGSC0003DMT400024250	Potato	cytosol, plastid	38.46	37.17
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	44.23	36.62
TraesCS7A01G395400.1	Wheat	cytosol	40.0	35.99
TraesCS7B01G297300.1	Wheat	cytosol	40.0	35.62
HORVU7Hr1G093230.2	Barley	cytosol	39.62	33.99
PGSC0003DMT400005182	Potato	nucleus	33.08	32.09

Protein Annotations

EntrezGene:102585675	Gene3D:3.30.1330.80	MapMan:35.1	InterPro:AT-hook_nuclear	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003680	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005175	UniProt:M1ALW3	PFAM:PF03479
EnsemblPlantsGene:PGSC0003DMG400009926	PGSC:PGSC0003DMG400009926	EnsemblPlants:PGSC0003DMT400025705	PIRSF:PIRSF016021	InterPro:PPC_dom	PFscan:PS51742
PANTHER:PTHR31100	PANTHER:PTHR31100:SF5	SUPFAM:SSF117856	UniParc:UPI000294A72B	RefSeq:XP_006342184.1	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009926]

Coordinates

chr4:+:71967264..71969437

Molecular Weight (calculated)

26043.4 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.188

Length

260 amino acids

Sequence
(BLAST)

001: MDFNYSLGLS RGESDSDAGA SSGGGAPGTS SNRRPRGRPP GSKNKPKPPI IVTRDTPNAL RSHVLEVSTD VDIMESISNY ARRRGRGVCI LSGSGTVANV
101: NIRQPASPAA TVVTLHGRFE ILSLSGTVLP PPAPPGSSGI SIFLSGGQGQ VVGGSVVGPL MASGPVVLMA ASFANAVFER LPLEEEDAAA ANANANANAS
201: GVGAPTTQVQ PAASQSSGVT GGGEAGTGEG GNMAFGNNNY SFSAELLGWG GNAANERPPF

Best Arabidopsis Sequence Match ( AT1G76500.1 )
(BLAST)

001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF

Arabidopsis Description

AHL29AT-hook motif nuclear-localized protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9K7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.