Factsheet for PGSC0003DMT400004515

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g080960.2.1	Tomato	nucleus	97.32	82.26
KRH00993	Soybean	nucleus	67.86	56.72
KRH40225	Soybean	nucleus	67.41	55.93
PGSC0003DMT400002959	Potato	nucleus	63.84	53.96
PGSC0003DMT400045203	Potato	nucleus	63.84	49.31
Os04t0590200-01	Rice	cytosol	64.73	47.54
PGSC0003DMT400045315	Potato	nucleus	46.88	47.51
TraesCS2D01G448700.1	Wheat	cytosol, nucleus, peroxisome	65.62	46.96
TraesCS2B01G470600.1	Wheat	cytosol, nucleus, peroxisome	65.62	46.96
Zm00001d026035_P001	Maize	cytosol, nucleus, peroxisome	64.29	46.45
TraesCS2A01G449300.1	Wheat	cytosol, nucleus, peroxisome	65.18	46.35
Zm00001d002495_P001	Maize	cytosol, nucleus, peroxisome	63.84	46.28
EES12751	Sorghum	cytosol, nucleus, peroxisome	64.29	46.15
VIT_15s0045g01130.t01	Wine grape	cytosol, plastid	47.77	43.5
PGSC0003DMT400044573	Potato	cytosol	44.64	39.84
PGSC0003DMT400033248	Potato	nucleus	52.68	38.31
PGSC0003DMT400010004	Potato	nucleus	50.0	38.23
PGSC0003DMT400044451	Potato	nucleus	47.32	37.19
PGSC0003DMT400073795	Potato	nucleus	48.66	36.7
PGSC0003DMT400025705	Potato	plastid	41.52	35.77
PGSC0003DMT400032509	Potato	nucleus	49.11	35.37
PGSC0003DMT400069792	Potato	cytosol, nucleus, plastid	48.66	34.71
PGSC0003DMT400024250	Potato	cytosol, plastid	32.59	27.14
PGSC0003DMT400005182	Potato	nucleus	29.02	24.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400004515	EnsemblPlantsGene:PGSC0003DMG400001796	InterPro:IPR005175	InterPro:PPC_dom	PANTHER:PTHR31100	PANTHER:PTHR31100:SF21
PFAM:PF03479	PFscan:PS51742	PGSC:PGSC0003DMG400001796	SEG:seg	SUPFAM:SSF117856	UniParc:UPI000294E94C
UniProt:M0ZNK1	MapMan:35.1	:	:	:	:

Description

ESC [Source:PGSC_GENE;Acc:PGSC0003DMG400001796]

Coordinates

chr1:+:67854726..67855786

Molecular Weight (calculated)

23791.7 Da

IEP (calculated)

6.144

GRAVY (calculated)

-0.545

Length

224 amino acids

Sequence
(BLAST)

001: MAGLDLGSAS HHRFLPHHLH NPQDDEINRN NTQFSDDDNN NNNDNNNNSP GVARRPRGRP AGSKNKPKPP VIITRESANA LRAHILEAAG SVVTLHGRFE
101: ILSLSGSFLP PPAPPGATSL TIYLAGGQGQ VVGGNVVGAL IASGPVIVIA SSFTNVAYER LPLDEENESI QMQQQQGQSG NFADPSNIGL PFLNLPLNMP
201: NGGQLQLESG GEGWNGNSTN RPQY

Best Arabidopsis Sequence Match ( AT2G35270.1 )
(BLAST)

001: MAGLDLGTTS RYVHNVDGGG GGQFTTDNHH EDDGGAGGNH HHHHHNHNHH QGLDLIASND NSGLGGGGGG GSGDLVMRRP RGRPAGSKNK PKPPVIVTRE
101: SANTLRAHIL EVGSGCDVFE CISTYARRRQ RGICVLSGTG TVTNVSIRQP TAAGAVVTLR GTFEILSLSG SFLPPPAPPG ATSLTIFLAG AQGQVVGGNV
201: VGELMAAGPV MVMAASFTNV AYERLPLDEH EEHLQSGGGG GGGNMYSEAT GGGGGLPFFN LPMSMPQIGV ESWQGNHAGA GRAPF

Arabidopsis Description

AHL21AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.