Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076220.2.1 | Tomato | nucleus | 91.82 | 73.51 |
| KRH62181 | Soybean | nucleus | 60.22 | 57.86 |
| KRH52892 | Soybean | nucleus | 60.59 | 57.39 |
| CDX83182 | Canola | cytosol | 50.93 | 55.92 |
| CDY21451 | Canola | cytosol | 50.93 | 55.92 |
| PGSC0003DMT400005182 | Potato | nucleus | 54.65 | 54.85 |
| Bra000593.1-P | Field mustard | cytosol | 53.53 | 54.75 |
| VIT_18s0001g07380.t01 | Wine grape | nucleus | 49.81 | 54.69 |
| Bra026211.1-P | Field mustard | plastid | 41.26 | 54.15 |
| KRH72453 | Soybean | nucleus | 54.28 | 53.87 |
| CDY45266 | Canola | plastid | 40.89 | 53.66 |
| GSMUA_Achr7P19000_001 | Banana | cytosol, plasma membrane, plastid | 36.8 | 53.23 |
| AT1G14490.2 | Thale cress | plastid | 44.24 | 52.89 |
| AT5G49700.1 | Thale cress | nucleus | 52.79 | 51.45 |
| KRH16838 | Soybean | nucleus | 46.47 | 48.83 |
| GSMUA_Achr8P23410_001 | Banana | cytosol | 34.94 | 45.85 |
| GSMUA_Achr10P... | Banana | nucleus | 46.1 | 44.44 |
| CDY65376 | Canola | nucleus | 43.12 | 42.18 |
| GSMUA_Achr3P06770_001 | Banana | cytosol | 34.57 | 40.97 |
| PGSC0003DMT400045315 | Potato | nucleus | 33.46 | 40.72 |
| PGSC0003DMT400025705 | Potato | plastid | 37.17 | 38.46 |
| TraesCS5D01G252500.1 | Wheat | cytosol | 44.98 | 36.12 |
| TraesCS5B01G243200.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 44.98 | 36.01 |
| PGSC0003DMT400044573 | Potato | cytosol | 33.46 | 35.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.61 | 35.82 |
| Os09t0464300-00 | Rice | nucleus | 43.87 | 35.33 |
| TraesCS5A01G245800.1 | Wheat | cytosol, endoplasmic reticulum, nucleus | 44.61 | 35.29 |
| Zm00001d020768_P001 | Maize | cytosol | 43.49 | 35.14 |
| PGSC0003DMT400044451 | Potato | nucleus | 37.17 | 35.09 |
| PGSC0003DMT400073795 | Potato | nucleus | 38.66 | 35.02 |
| Zm00001d005923_P001 | Maize | nucleus | 43.49 | 34.01 |
| Os08t0478466-01 | Rice | nucleus | 39.78 | 33.02 |
| PGSC0003DMT400002959 | Potato | nucleus | 32.34 | 32.83 |
| PGSC0003DMT400045203 | Potato | nucleus | 35.32 | 32.76 |
| PGSC0003DMT400004515 | Potato | nucleus | 27.14 | 32.59 |
| PGSC0003DMT400010004 | Potato | nucleus | 35.32 | 32.42 |
| OQU89633 | Sorghum | cytosol | 42.38 | 32.2 |
| PGSC0003DMT400033248 | Potato | nucleus | 36.8 | 32.14 |
| PGSC0003DMT400069792 | Potato | cytosol, nucleus, plastid | 35.69 | 30.57 |
| KXG25333 | Sorghum | cytosol | 37.55 | 30.33 |
| Zm00001d031826_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 32.71 | 29.93 |
| PGSC0003DMT400032509 | Potato | nucleus | 33.83 | 29.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400024250 | EnsemblPlantsGene:PGSC0003DMG400009365 | Gene3D:3.30.1330.80 | InterPro:IPR005175 | InterPro:PPC_dom | PANTHER:PTHR31100 |
| PANTHER:PTHR31100:SF1 | PFAM:PF03479 | PFscan:PS51742 | PGSC:PGSC0003DMG400009365 | SEG:seg | SUPFAM:SSF117856 |
| UniParc:UPI000295668D | UniProt:M1AJR1 | MapMan:35.1 | : | : | : |
Description
AT-hook DNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009365]
Coordinates
chr4:+:64902741..64904237
Molecular Weight (calculated)
27833.9 Da
IEP (calculated)
7.504
GRAVY (calculated)
-0.363
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPTNRNDTL NPQPVNAVAP PPPPQQPPSS AGNDGATIEV VRRPRGRPPG SKNKPKPPVI ITRDAEPSMS PYILEIPTGV DIINSITKFC RKRNMGLCVL
101: NGSGTVTNVT LRQPSTTPVS TVTFHGRFDI LSISATVVQP NASVPSNNGI ANGFTISLAG PQGQVVGGGV IGPLVTAGTV YLIAATFNGP SYHQLPAEEE
201: LARNNSGGGN EDGSPPPHAE VSGGGDSGHP PSTTAPETCG MSIYSCHLPS DVIWAPTARQ PQPPPPPPY
101: NGSGTVTNVT LRQPSTTPVS TVTFHGRFDI LSISATVVQP NASVPSNNGI ANGFTISLAG PQGQVVGGGV IGPLVTAGTV YLIAATFNGP SYHQLPAEEE
201: LARNNSGGGN EDGSPPPHAE VSGGGDSGHP PSTTAPETCG MSIYSCHLPS DVIWAPTARQ PQPPPPPPY
001: MKGEYREQKS NEMFSKLPHH QQQQQQQQQQ HSLTSHFHLS STVTPTVDDS SIEVVRRPRG RPPGSKNKPK PPVFVTRDTD PPMSPYILEV PSGNDVVEAI
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
101: NRFCRRKSIG VCVLSGSGSV ANVTLRQPSP AALGSTITFH GKFDLLSVSA TFLPPPPRTS LSPPVSNFFT VSLAGPQGQI IGGFVAGPLI SAGTVYVIAA
201: SFNNPSYHRL PAEEEQKHSA GTGEREGQSP PVSGGGEESG QMAGSGGESC GVSMYSCHMG GSDVIWAPTA RAPPPY
Arabidopsis Description
AHL17AT-hook motif nuclear-localized protein 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.